BLASTX nr result

ID: Coptis25_contig00026861 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026861
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26718.3| unnamed protein product [Vitis vinifera]               94   1e-17
ref|XP_002276813.1| PREDICTED: sodium/hydrogen exchanger 4-like ...    94   1e-17
ref|XP_003600216.1| Sodium/hydrogen exchanger [Medicago truncatu...    91   1e-16
ref|XP_003530775.1| PREDICTED: sodium/hydrogen exchanger 4-like ...    83   2e-14
ref|NP_200358.1| sodium/hydrogen exchanger 4 [Arabidopsis thalia...    82   4e-14

>emb|CBI26718.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 49/92 (53%), Positives = 59/92 (64%)
 Frame = -3

Query: 435 VVFTTLVLGAFTKSLIKLLVPQHVLDTPSLQDQTXXXXXXXXXXXSFKESAKTNT*RAKS 256
           V+FTTLV G  TK LI  L P H  +  S  +             S +ESA+TN  RAK 
Sbjct: 423 VLFTTLVFGFLTKPLISFLQPHHTNNNTSHGEPRSPKEDLSLPLLSLEESAETNILRAKE 482

Query: 255 SLSMLIQKPGSTIHSFWRRFDDTYMRPVFGGP 160
           SLSMLI++P  TIH++WR+FDDTYMRPVFGGP
Sbjct: 483 SLSMLIERPVYTIHNYWRKFDDTYMRPVFGGP 514


>ref|XP_002276813.1| PREDICTED: sodium/hydrogen exchanger 4-like [Vitis vinifera]
          Length = 521

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 49/92 (53%), Positives = 59/92 (64%)
 Frame = -3

Query: 435 VVFTTLVLGAFTKSLIKLLVPQHVLDTPSLQDQTXXXXXXXXXXXSFKESAKTNT*RAKS 256
           V+FTTLV G  TK LI  L P H  +  S  +             S +ESA+TN  RAK 
Sbjct: 423 VLFTTLVFGFLTKPLISFLQPHHTNNNTSHGEPRSPKEDLSLPLLSLEESAETNILRAKE 482

Query: 255 SLSMLIQKPGSTIHSFWRRFDDTYMRPVFGGP 160
           SLSMLI++P  TIH++WR+FDDTYMRPVFGGP
Sbjct: 483 SLSMLIERPVYTIHNYWRKFDDTYMRPVFGGP 514


>ref|XP_003600216.1| Sodium/hydrogen exchanger [Medicago truncatula]
           gi|355489264|gb|AES70467.1| Sodium/hydrogen exchanger
           [Medicago truncatula]
          Length = 557

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 47/93 (50%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
 Frame = -3

Query: 435 VVFTTLVLGAFTKSLIKLLVPQHVLDT-PSLQDQTXXXXXXXXXXXSFKESAKTNT*RAK 259
           V+FTTLV G  TK L++ L+P H      + ++ T           SF+ESA TN  RAK
Sbjct: 458 VLFTTLVFGCLTKPLVRYLLPHHATRVNTNHEESTSPVEDMNLPLLSFEESAATNISRAK 517

Query: 258 SSLSMLIQKPGSTIHSFWRRFDDTYMRPVFGGP 160
            SLSML + P  TIH +WRRFDD+YMRP+FGGP
Sbjct: 518 ESLSMLFESPVYTIHYYWRRFDDSYMRPLFGGP 550


>ref|XP_003530775.1| PREDICTED: sodium/hydrogen exchanger 4-like [Glycine max]
          Length = 529

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 46/93 (49%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
 Frame = -3

Query: 435 VVFTTLVLGAFTKSLIKLLVPQHVL-DTPSLQDQTXXXXXXXXXXXSFKESAKTNT*RAK 259
           V+F+TLV G  TK LI+ L+P      + S  +             S +ESA TN  RAK
Sbjct: 430 VLFSTLVFGFLTKPLIRYLLPHSATRKSISHSESGPPFDDLNLPFLSLEESAATNISRAK 489

Query: 258 SSLSMLIQKPGSTIHSFWRRFDDTYMRPVFGGP 160
           +SLSMLI+ P  TIH +WRRFDD YMRP+FGGP
Sbjct: 490 ASLSMLIESPVFTIHRYWRRFDDAYMRPIFGGP 522


>ref|NP_200358.1| sodium/hydrogen exchanger 4 [Arabidopsis thaliana]
           gi|84029369|sp|Q8S397.2|NHX4_ARATH RecName:
           Full=Sodium/hydrogen exchanger 4; AltName:
           Full=Na(+)/H(+) exchanger 4; Short=NHE-4
           gi|9758179|dbj|BAB08564.1| sodium proton exchanger
           [Arabidopsis thaliana] gi|62320490|dbj|BAD95025.1|
           sodium proton exchanger [Arabidopsis thaliana]
           gi|332009249|gb|AED96632.1| sodium/hydrogen exchanger 4
           [Arabidopsis thaliana]
          Length = 529

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
 Frame = -3

Query: 435 VVFTTLVLGAFTKSLIKLLVPQHVLDTPSLQDQTXXXXXXXXXXXS----FKESAKTNT* 268
           V+FTTLV G  TK L+  L+PQ        + +                 F ESA TN  
Sbjct: 426 VLFTTLVFGFLTKPLVNYLLPQDASHNTGNRGKRTEPGSPKEDATLPLLSFDESASTNFN 485

Query: 267 RAKSSLSMLIQKPGSTIHSFWRRFDDTYMRPVFGGP 160
           RAK S+S+L+++P  TIH +WR+FDDTYMRP+FGGP
Sbjct: 486 RAKDSISLLMEQPVYTIHRYWRKFDDTYMRPIFGGP 521


Top