BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026834
         (662 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37965.3| unnamed protein product [Vitis vinifera]               78   2e-13
ref|XP_002275925.1| PREDICTED: putative pentatricopeptide repeat...    78   2e-13
ref|XP_002513017.1| pentatricopeptide repeat-containing protein,...    77   9e-13
ref|XP_003523507.1| PREDICTED: pentatricopeptide repeat-containi...    69   4e-10
ref|XP_004158417.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    69   8e-10

>emb|CBI37965.3| unnamed protein product [Vitis vinifera]
          Length = 371

 Score = 77.8 bits (190), Expect(2) = 2e-13
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 127 SALVGIFGKLLVLSDASKMFDEIPLKNTVCVNALLSGFEEGQLWDESLSFVSLMRRLGLE 306
           SALV ++ KL +++DA+ +FDEIP+KNTVC NALLSG+ E +LW E L FV  MR L L 
Sbjct: 49  SALVDMYAKLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMRSLNLN 108

Query: 307 YHQFTWKGM 333
              FT   M
Sbjct: 109 CDHFTLSAM 117



 Score = 23.1 bits (48), Expect(2) = 2e-13
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 321 VEGDGFLQSSLIE 359
           VE D FLQSSLIE
Sbjct: 144 VEADVFLQSSLIE 156


>ref|XP_002275925.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Vitis vinifera]
          Length = 349

 Score = 77.8 bits (190), Expect(2) = 2e-13
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 127 SALVGIFGKLLVLSDASKMFDEIPLKNTVCVNALLSGFEEGQLWDESLSFVSLMRRLGLE 306
           SALV ++ KL +++DA+ +FDEIP+KNTVC NALLSG+ E +LW E L FV  MR L L 
Sbjct: 27  SALVDMYAKLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMRSLNLN 86

Query: 307 YHQFTWKGM 333
              FT   M
Sbjct: 87  CDHFTLSAM 95



 Score = 23.1 bits (48), Expect(2) = 2e-13
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 321 VEGDGFLQSSLIE 359
           VE D FLQSSLIE
Sbjct: 122 VEADVFLQSSLIE 134


>ref|XP_002513017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548028|gb|EEF49520.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 349

 Score = 76.6 bits (187), Expect(2) = 9e-13
 Identities = 41/95 (43%), Positives = 56/95 (58%)
 Frame = +1

Query: 49  LEFYHQPHKHVLKLGFFV*CLCR*WRSALVGIFGKLLVLSDASKMFDEIPLKNTVCVNAL 228
           + F  Q H HV+K G+          SAL+ ++ KL   SDA+ +FDEIP+KNTVC NAL
Sbjct: 4   VNFGEQIHAHVIKSGWLSSVFVG---SALIDLYSKLSFPSDAATVFDEIPVKNTVCANAL 60

Query: 229 LSGFEEGQLWDESLSFVSLMRRLGLEYHQFTWKGM 333
           LSG+ E +LW + +  +  M  L L+Y  FT   M
Sbjct: 61  LSGYIEAKLWYQGVELIKEMPFLSLDYDNFTLSAM 95



 Score = 22.3 bits (46), Expect(2) = 9e-13
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 321 VEGDGFLQSSLIE 359
           VE D F+QSSLIE
Sbjct: 122 VENDVFMQSSLIE 134


>ref|XP_003523507.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 472

 Score = 68.9 bits (167), Expect(2) = 4e-10
 Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
 Frame = +1

Query: 64  QPHKHVLKLGF----FV*CLCR*WRSALVGIFGKLLVLSDASKMFDEIPLKNTVCVNALL 231
           Q H HV K G+    FV        SAL+  + KL  + DA+ MFDEIP KNTVC NALL
Sbjct: 129 QIHAHVAKSGWSSSVFV-------GSALIDFYSKLSNVKDAAHMFDEIPEKNTVCANALL 181

Query: 232 SGFEEGQLWDESLSFVSLMRRLGLEYHQFT 321
           SG+ E  LW + L  V  M  L L++  FT
Sbjct: 182 SGYAEAGLWVQELQLVRKMPVLKLKHDHFT 211



 Score = 21.2 bits (43), Expect(2) = 4e-10
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 321 VEGDGFLQSSLIE 359
           +E D FLQS+L+E
Sbjct: 242 IESDVFLQSALVE 254


>ref|XP_004158417.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g18750, chloroplastic-like [Cucumis sativus]
          Length = 497

 Score = 68.9 bits (167), Expect = 8e-10
 Identities = 31/65 (47%), Positives = 47/65 (72%)
 Frame = +1

Query: 127 SALVGIFGKLLVLSDASKMFDEIPLKNTVCVNALLSGFEEGQLWDESLSFVSLMRRLGLE 306
           SA+V ++ K  ++ DA ++FDE+P+KNTVC NALL+G+ E ++W E L  +  M+ L L+
Sbjct: 178 SAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQGLDLK 237

Query: 307 YHQFT 321
           Y QFT
Sbjct: 238 YDQFT 242