BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026716
         (724 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containi...   175   1e-41
ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containi...   174   2e-41
emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]   174   2e-41
emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera]   171   1e-40
emb|CBI35966.3| unnamed protein product [Vitis vinifera]              171   2e-40

>ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
           gi|297739328|emb|CBI28979.3| unnamed protein product
           [Vitis vinifera]
          Length = 585

 Score =  175 bits (443), Expect = 1e-41
 Identities = 101/238 (42%), Positives = 149/238 (62%), Gaps = 7/238 (2%)
 Frame = -1

Query: 697 SQLQACKTITHLKQLLSKLITNGLIRKPIILTQLIEYL---SLSQNTSFLIYANLLIQTE 527
           S LQ  KT + + Q+ ++LIT  LI      ++L++ +   +L+ N + L++A +    +
Sbjct: 16  SLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQI---HQ 72

Query: 526 PNNSSSYLWNVLIRGYSRSSFPEQGLITYVKMLRSLTRPDNYTYPFVLKTVGS---IWEG 356
           PN   S++ N +++ Y+ SS PE+ L  Y +M R     DNYTYPFVLK  G+   + EG
Sbjct: 73  PN---SFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEG 129

Query: 355 MQVHGHVFRNGFGDNVFVVNTLISMYCGFKEMGLGRKVFDECGTLDIVSWNSLIDGYVKL 176
             V G   + GFG +VFVVN LISMYC   E G  R VFD     D+VSWNS++ GYV  
Sbjct: 130 GLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWC 189

Query: 175 GVLDMARRLFDKMPERNEVSWTVIISGYAKK-GDLDVAKSLFERMPVCRNTVTWNSMI 5
           G ++ A+ +FD+MPER+ VSW+++I GY KK G+++ A+  F+ MP  R+ V+WNSMI
Sbjct: 190 GEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPT-RDLVSWNSMI 246


>ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  174 bits (441), Expect = 2e-41
 Identities = 98/237 (41%), Positives = 143/237 (60%), Gaps = 3/237 (1%)
 Frame = -1

Query: 706 QIQSQLQACKTITHLKQLLSKLITNGLIRKPIILTQLIEYLSLSQNTSFLIYANLLIQTE 527
           QI S    CKT+ HLKQ+ +++IT+     P  L+ L    +LS   +FL YA  +    
Sbjct: 98  QILSLFNPCKTLRHLKQVHAQIITHH--NSPFQLSALASLSALSPFPTFLAYAKTIFHHL 155

Query: 526 PNNSSSYLWNVLIRGYSRSSFPEQGLITYVKMLRSLTRPDNYTYPFVLKTVGS---IWEG 356
            N   S L+N LIR  S S  P + L  Y  ML+S  +PD+ TYPFV+K        W G
Sbjct: 156 QNPPPS-LYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFG 214

Query: 355 MQVHGHVFRNGFGDNVFVVNTLISMYCGFKEMGLGRKVFDECGTLDIVSWNSLIDGYVKL 176
           + VH HV ++GF  + ++V++LI +Y   K++G  +++F+ C   D+VSWN++IDGYVK 
Sbjct: 215 LLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKH 274

Query: 175 GVLDMARRLFDKMPERNEVSWTVIISGYAKKGDLDVAKSLFERMPVCRNTVTWNSMI 5
             +  AR +FD+M  R+ +SW  +I+GYA  G +D AK LF+ MP  RN V+WNSM+
Sbjct: 275 VEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPE-RNLVSWNSML 330



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 39/160 (24%), Positives = 80/160 (50%), Gaps = 7/160 (4%)
 Frame = -1

Query: 502 WNVLIRGYSRSSFPEQGLITYVKMLRSLTRPDNYTYPFVLKT---VGSIWEGMQVHGHVF 332
           WN ++  Y++   P + L  + +M     +P   T   +L     +G++ +G+ +H ++ 
Sbjct: 357 WNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN 416

Query: 331 RNGFGDNVFVVNTLISMYCGFKEMGLGRKVFDECGTLDIVSWNSLIDGYVKLGVLDMARR 152
            N    N  V   L+ MY    ++ L  +VF+   + D+++WN++I G    G +  A++
Sbjct: 417 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQ 476

Query: 151 LFDKMPER----NEVSWTVIISGYAKKGDLDVAKSLFERM 44
           LF +M E     N++++  I+S  +  G +D  + L + M
Sbjct: 477 LFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCM 516


>emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  174 bits (440), Expect = 2e-41
 Identities = 100/238 (42%), Positives = 149/238 (62%), Gaps = 7/238 (2%)
 Frame = -1

Query: 697 SQLQACKTITHLKQLLSKLITNGLIRKPIILTQLIEYL---SLSQNTSFLIYANLLIQTE 527
           S LQ  KT + + Q+ ++LIT  LI      ++L++ +   +L+ N + L++A +    +
Sbjct: 16  SLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQI---HQ 72

Query: 526 PNNSSSYLWNVLIRGYSRSSFPEQGLITYVKMLRSLTRPDNYTYPFVLKTVGS---IWEG 356
           PN   S++ N +++ Y+ SS PE+ L  Y +M +     DNYTYPFVLK  G+   + EG
Sbjct: 73  PN---SFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEG 129

Query: 355 MQVHGHVFRNGFGDNVFVVNTLISMYCGFKEMGLGRKVFDECGTLDIVSWNSLIDGYVKL 176
             V G   + GFG +VFVVN LISMYC   E G  R VFD     D+VSWNS++ GYV  
Sbjct: 130 GLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWC 189

Query: 175 GVLDMARRLFDKMPERNEVSWTVIISGYAKK-GDLDVAKSLFERMPVCRNTVTWNSMI 5
           G ++ A+ +FD+MPER+ VSW+++I GY KK G+++ A+  F+ MP  R+ V+WNSMI
Sbjct: 190 GEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPT-RDLVSWNSMI 246


>emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera]
          Length = 717

 Score =  171 bits (433), Expect = 1e-40
 Identities = 97/234 (41%), Positives = 141/234 (60%), Gaps = 3/234 (1%)
 Frame = -1

Query: 697 SQLQACKTITHLKQLLSKLITNGLIRKPIILTQLIEYLSLSQNTSFLIYANLLIQTEPNN 518
           S    CKT+ HLKQL +++IT+     P  L+ L    +LS   +FL YA  +     N 
Sbjct: 105 SLFNPCKTLRHLKQLHAQIITHH--NSPFPLSALASLSALSPFPTFLAYAKTIFHHLQNP 162

Query: 517 SSSYLWNVLIRGYSRSSFPEQGLITYVKMLRSLTRPDNYTYPFVLKTVGS---IWEGMQV 347
           S S L+N LIR  S S  P + L  Y   L+S  +PD+ TYPFV+K        W G+ V
Sbjct: 163 SPS-LYNSLIRALSSSKTPLEALPLYHTKLQSGLKPDHMTYPFVIKACNESSMTWFGLLV 221

Query: 346 HGHVFRNGFGDNVFVVNTLISMYCGFKEMGLGRKVFDECGTLDIVSWNSLIDGYVKLGVL 167
           H HV ++GF  + ++V++LI +Y   K++   +++F+ C   D+VSWN++IDGYVK G +
Sbjct: 222 HTHVVKSGFECDSYIVSSLIHLYANGKDLVAAKQLFNLCSDRDLVSWNAMIDGYVKRGEM 281

Query: 166 DMARRLFDKMPERNEVSWTVIISGYAKKGDLDVAKSLFERMPVCRNTVTWNSMI 5
             AR +FD+M  R+ +SW  +I+GYA  G +D AK LF+ MP  RN V+WNSM+
Sbjct: 282 GHARIVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPE-RNLVSWNSML 334


>emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  171 bits (432), Expect = 2e-40
 Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 4/233 (1%)
 Frame = -1

Query: 697 SQLQACKTITHLKQLLSKLITNGLIRKPIILTQLIEYLSLSQNTSFLIYANLLIQTEPNN 518
           S L+   ++T + Q+ ++ + +GL  +  ++ +LI+  S+        YA  ++   P+ 
Sbjct: 4   SLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSID-------YARFVLDQTPS- 55

Query: 517 SSSYLWNVLIRGYSRSSFPEQGLITYVKMLRSLTRPDNYTYPFVLK---TVGSIWEGMQV 347
            + + WN LIR Y+    P+  L  Y+KMLRS T+P N+T+PFVLK   T+GS+ EG Q+
Sbjct: 56  PTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQI 115

Query: 346 HGHVFRNGFGDNVFVVNTLISMYCGFKEMGLGRKVFDECGTLDIVSWNSLIDGYVKLGVL 167
           H HV R GFG ++FV N+LI MYC    +   R  +D+ G  D VSWNS+I GYV+ G +
Sbjct: 116 HTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQV 175

Query: 166 DMARRLFDKMP-ERNEVSWTVIISGYAKKGDLDVAKSLFERMPVCRNTVTWNS 11
           + AR LF++MP  RN V WT +I+GY K+GD     SLF +M V  + V  N+
Sbjct: 176 EKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNA 228