BLASTX nr result
ID: Coptis25_contig00026690
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00026690
(1150 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi... 377 e-102
emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera] 377 e-102
ref|XP_002532584.1| pentatricopeptide repeat-containing protein,... 369 e-100
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 350 3e-94
ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi... 350 3e-94
>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like
[Vitis vinifera]
Length = 881
Score = 377 bits (967), Expect = e-102
Identities = 196/338 (57%), Positives = 248/338 (73%), Gaps = 3/338 (0%)
Frame = +3
Query: 141 SKQLASSFKDWFRTREDALL-NRIFEILXXXXXXXXXXXXXLPVSARTSELELSQLGLRL 317
+K + SFK WF++ ++ LL ++IF IL LP ++ L +L L L
Sbjct: 60 AKDVVLSFKQWFKSPQNILLMDQIFRILSD-----------LPPD--DADAALGRLRLPL 106
Query: 318 NEMFVLRVLKSGKDVLSCLKFFDWAGRQPGFYHTRATFHAIFKILSKQKLMSVMLDFLES 497
+E FVL VL G DVLSCLKFFDWAGRQPGF+HTRATFHA FKIL++ KLMS+MLDFL++
Sbjct: 107 SERFVLDVLAHGSDVLSCLKFFDWAGRQPGFHHTRATFHATFKILARAKLMSLMLDFLQN 166
Query: 498 YRMQKMSHRVRFYDTLVAGYAVAGKPGIALKLFGAMRFQGFDLGPFAYHVFLNALVEQSC 677
Y + HRVRFYDTLV GYAVAGKP IAL+LF MRFQG DL FAYHV LNALVE++C
Sbjct: 167 YTELRYVHRVRFYDTLVMGYAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNALVEENC 226
Query: 678 FDVVEVVLKQIKLRGLENEVTSCIRVKNYCKQNKLSEAVFYLRRLQSKGDV--INDHMVG 851
FD VV++QI++RGL+NE+T I VKN+CKQ +L EA ++ +L G V HMVG
Sbjct: 227 FDAFRVVVEQIRMRGLDNEITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVG 286
Query: 852 ILVDAHCKKNKFKEAHRLMEDFWGLRKFSLGNTYGIWIRNLVQAGKLDGAMDFLQSKKLM 1031
++VDA CK+ +F EA RL+E+F G S+ YG+WIR+LV+AG+LDGA++FL SKK
Sbjct: 287 LIVDALCKRKRFGEAGRLVEEFQGSGMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKES 346
Query: 1032 EGYVPEVFRYNVLVCRLLRENRLDDVCDLLVEMMEGRI 1145
EGYVPEV YN+L+CRLLRENRL++V DLL+EM EG+I
Sbjct: 347 EGYVPEVCGYNILICRLLRENRLEEVLDLLMEMREGQI 384
>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
Length = 1173
Score = 377 bits (967), Expect = e-102
Identities = 196/338 (57%), Positives = 248/338 (73%), Gaps = 3/338 (0%)
Frame = +3
Query: 141 SKQLASSFKDWFRTREDALL-NRIFEILXXXXXXXXXXXXXLPVSARTSELELSQLGLRL 317
+K + SFK WF++ ++ LL ++IF IL LP ++ L +L L L
Sbjct: 60 AKDVVLSFKQWFKSPQNILLMDQIFRILSD-----------LPPD--DADAALGRLRLPL 106
Query: 318 NEMFVLRVLKSGKDVLSCLKFFDWAGRQPGFYHTRATFHAIFKILSKQKLMSVMLDFLES 497
+E FVL VL G DVLSCLKFFDWAGRQPGF+HTRATFHA FKIL++ KLMS+MLDFL++
Sbjct: 107 SERFVLDVLAHGSDVLSCLKFFDWAGRQPGFHHTRATFHATFKILARAKLMSLMLDFLQN 166
Query: 498 YRMQKMSHRVRFYDTLVAGYAVAGKPGIALKLFGAMRFQGFDLGPFAYHVFLNALVEQSC 677
Y + HRVRFYDTLV GYAVAGKP IAL+LF MRFQG DL FAYHV LNALVE++C
Sbjct: 167 YTELRYVHRVRFYDTLVMGYAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNALVEENC 226
Query: 678 FDVVEVVLKQIKLRGLENEVTSCIRVKNYCKQNKLSEAVFYLRRLQSKGDV--INDHMVG 851
FD VV++QI++RGL+NE+T I VKN+CKQ +L EA ++ +L G V HMVG
Sbjct: 227 FDAFRVVVEQIRMRGLDNEITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVG 286
Query: 852 ILVDAHCKKNKFKEAHRLMEDFWGLRKFSLGNTYGIWIRNLVQAGKLDGAMDFLQSKKLM 1031
++VDA CK+ +F EA RL+E+F G S+ YG+WIR+LV+AG+LDGA++FL SKK
Sbjct: 287 LIVDALCKRKRFGEAGRLVEEFQGSGMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKES 346
Query: 1032 EGYVPEVFRYNVLVCRLLRENRLDDVCDLLVEMMEGRI 1145
EGYVPEV YN+L+CRLLRENRL++V DLL+EM EG+I
Sbjct: 347 EGYVPEVCGYNILICRLLRENRLEEVLDLLMEMREGQI 384
>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 895
Score = 369 bits (948), Expect = e-100
Identities = 191/344 (55%), Positives = 237/344 (68%), Gaps = 6/344 (1%)
Frame = +3
Query: 135 YDSKQLASSFKDWFRTREDALLNRIFEILXXXXXXXXXXXXXLPVSARTSELELSQLGLR 314
Y K + SFK+WF+T+ + L+R+FEIL EL LSQLGLR
Sbjct: 70 YTYKHVVQSFKEWFKTQNNGFLDRVFEILSNQD--------------EVDELALSQLGLR 115
Query: 315 LNEMFVLRVLKSG---KDVLSCLKFFDWAGRQPGFYHTRATFHAIFKILSKQKLMSVMLD 485
L E VL VL G KDVLSCLKFFDWAGRQ GFYHTRATFHAIFKILSK KLM +MLD
Sbjct: 116 LTESLVLDVLHYGNSKKDVLSCLKFFDWAGRQSGFYHTRATFHAIFKILSKAKLMQLMLD 175
Query: 486 FLESYRMQKMSHR---VRFYDTLVAGYAVAGKPGIALKLFGAMRFQGFDLGPFAYHVFLN 656
FL++Y + ++ FY TL+ GY+VAGKP +AL+LFG MRF G DL FAYH+ LN
Sbjct: 176 FLDNYMKHRFANHKLGYGFYSTLIMGYSVAGKPQVALQLFGKMRFLGRDLDAFAYHILLN 235
Query: 657 ALVEQSCFDVVEVVLKQIKLRGLENEVTSCIRVKNYCKQNKLSEAVFYLRRLQSKGDVIN 836
+LVE+ CFD V+ + KQI +RG E+ +T I VK++CKQ L EA YLRR+ +G+ N
Sbjct: 236 SLVEECCFDAVDDIAKQISIRGFESHITHSIVVKSFCKQRMLDEAEAYLRRMILQGESGN 295
Query: 837 DHMVGILVDAHCKKNKFKEAHRLMEDFWGLRKFSLGNTYGIWIRNLVQAGKLDGAMDFLQ 1016
VGILV A C+K +F++A +L+E+F LR L YG+W+RNLVQ GKLDGA+DF Q
Sbjct: 296 GAAVGILVGAFCQKGQFEKAGQLIEEFRELRVVPLYPAYGVWLRNLVQKGKLDGALDFFQ 355
Query: 1017 SKKLMEGYVPEVFRYNVLVCRLLRENRLDDVCDLLVEMMEGRIS 1148
KK +E YVPE+F YN L+CRLL+ENRL + CDLL+EMME S
Sbjct: 356 QKKTLESYVPEIFHYNALLCRLLKENRLTEACDLLMEMMEDGFS 399
>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71210-like, partial [Cucumis sativus]
Length = 889
Score = 350 bits (899), Expect = 3e-94
Identities = 181/337 (53%), Positives = 236/337 (70%), Gaps = 1/337 (0%)
Frame = +3
Query: 141 SKQLASSFKDWFRTREDALLNRIFEILXXXXXXXXXXXXXLPVSARTSELELSQLGLRLN 320
+K++ASSFK+WF++ + L +IF+IL +P ++L LS+LGLRLN
Sbjct: 54 TKEVASSFKEWFKSGSNPLYGKIFQILRGARDDQE-----IPYRPSAADLALSRLGLRLN 108
Query: 321 EMFVLRVLKSG-KDVLSCLKFFDWAGRQPGFYHTRATFHAIFKILSKQKLMSVMLDFLES 497
E FVL VL+ G KDVLSCLKFFDWAGRQ F+HTRATF+AI KILSK KL+S+M DFLE+
Sbjct: 109 ESFVLDVLRFGSKDVLSCLKFFDWAGRQERFFHTRATFNAILKILSKAKLVSLMFDFLEN 168
Query: 498 YRMQKMSHRVRFYDTLVAGYAVAGKPGIALKLFGAMRFQGFDLGPFAYHVFLNALVEQSC 677
K+ H FY+ LV GYA AGKP AL LFG MRFQG DL PF+YHV LN+LVE++C
Sbjct: 169 CVQHKLYHMPCFYNILVMGYAAAGKPIFALHLFGKMRFQGLDLDPFSYHVLLNSLVEENC 228
Query: 678 FDVVEVVLKQIKLRGLENEVTSCIRVKNYCKQNKLSEAVFYLRRLQSKGDVINDHMVGIL 857
FD V V++KQI LRG NE+T + +K++CKQN+L EA +L L G +N M+ +L
Sbjct: 229 FDAVNVIIKQITLRGFVNEITHYLMLKSFCKQNQLDEAETFLHDLVDSGKKLNGRMLDLL 288
Query: 858 VDAHCKKNKFKEAHRLMEDFWGLRKFSLGNTYGIWIRNLVQAGKLDGAMDFLQSKKLMEG 1037
V A C+ F+ A +L+E F L+ S+ + YG+WI L++AGKL+ A+ FL S KL
Sbjct: 289 VGAFCQSGNFERAWKLVEWFRDLQIVSMEHVYGVWITELIRAGKLESALQFLNSSKLDGR 348
Query: 1038 YVPEVFRYNVLVCRLLRENRLDDVCDLLVEMMEGRIS 1148
Y+P+VFRYN+L+ RLLRENRL +V DLL EMM+ IS
Sbjct: 349 YIPDVFRYNMLIHRLLRENRLQEVFDLLTEMMDQHIS 385
>ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like
[Cucumis sativus]
Length = 913
Score = 350 bits (899), Expect = 3e-94
Identities = 181/337 (53%), Positives = 236/337 (70%), Gaps = 1/337 (0%)
Frame = +3
Query: 141 SKQLASSFKDWFRTREDALLNRIFEILXXXXXXXXXXXXXLPVSARTSELELSQLGLRLN 320
+K++ASSFK+WF++ + L +IF+IL +P ++L LS+LGLRLN
Sbjct: 78 TKEVASSFKEWFKSGSNPLYGKIFQILRGARDDQE-----IPYRPSAADLALSRLGLRLN 132
Query: 321 EMFVLRVLKSG-KDVLSCLKFFDWAGRQPGFYHTRATFHAIFKILSKQKLMSVMLDFLES 497
E FVL VL+ G KDVLSCLKFFDWAGRQ F+HTRATF+AI KILSK KL+S+M DFLE+
Sbjct: 133 ESFVLDVLRFGSKDVLSCLKFFDWAGRQERFFHTRATFNAILKILSKAKLVSLMFDFLEN 192
Query: 498 YRMQKMSHRVRFYDTLVAGYAVAGKPGIALKLFGAMRFQGFDLGPFAYHVFLNALVEQSC 677
K+ H FY+ LV GYA AGKP AL LFG MRFQG DL PF+YHV LN+LVE++C
Sbjct: 193 CVQHKLYHMPCFYNILVMGYAAAGKPIFALHLFGKMRFQGLDLDPFSYHVLLNSLVEENC 252
Query: 678 FDVVEVVLKQIKLRGLENEVTSCIRVKNYCKQNKLSEAVFYLRRLQSKGDVINDHMVGIL 857
FD V V++KQI LRG NE+T + +K++CKQN+L EA +L L G +N M+ +L
Sbjct: 253 FDAVNVIIKQITLRGFVNEITHYLMLKSFCKQNQLDEAETFLHDLVDSGKKLNGRMLDLL 312
Query: 858 VDAHCKKNKFKEAHRLMEDFWGLRKFSLGNTYGIWIRNLVQAGKLDGAMDFLQSKKLMEG 1037
V A C+ F+ A +L+E F L+ S+ + YG+WI L++AGKL+ A+ FL S KL
Sbjct: 313 VGAFCQSGNFERAWKLVEWFRDLQIVSMEHVYGVWITELIRAGKLESALQFLNSSKLDGR 372
Query: 1038 YVPEVFRYNVLVCRLLRENRLDDVCDLLVEMMEGRIS 1148
Y+P+VFRYN+L+ RLLRENRL +V DLL EMM+ IS
Sbjct: 373 YIPDVFRYNMLIHRLLRENRLQEVFDLLTEMMDQHIS 409