BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026685
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
emb|CBI41082.3| unnamed protein product [Vitis vinifera]              108   6e-22
ref|XP_002884496.1| pentatricopeptide repeat-containing protein ...    60   2e-07
ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis th...    60   2e-07
gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thal...    60   2e-07

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  110 bits (276), Expect = 9e-23
 Identities = 55/89 (61%), Positives = 69/89 (77%), Gaps = 6/89 (6%)
 Frame = -2

Query: 255 IEQKFMSILQESTKFDHLIQIHAYV------RNNFILAKLLRQIFSCSSLKNLQYARSIF 94
           I +K MS+LQ +TK + +IQIHA +       NNF+LAKLLR++F+CSS  +L YARS+F
Sbjct: 2   IGKKVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVF 61

Query: 93  DENQSPDTFIWNTMIRAYLNVPNPQESVT 7
           DE  SPDTFIWNTMIRAYLN  NPQES++
Sbjct: 62  DEIPSPDTFIWNTMIRAYLNSQNPQESMS 90


>emb|CBI41082.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  108 bits (269), Expect = 6e-22
 Identities = 53/84 (63%), Positives = 66/84 (78%), Gaps = 6/84 (7%)
 Frame = -2

Query: 240 MSILQESTKFDHLIQIHAYV------RNNFILAKLLRQIFSCSSLKNLQYARSIFDENQS 79
           MS+LQ +TK + +IQIHA +       NNF+LAKLLR++F+CSS  +L YARS+FDE  S
Sbjct: 1   MSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPS 60

Query: 78  PDTFIWNTMIRAYLNVPNPQESVT 7
           PDTFIWNTMIRAYLN  NPQES++
Sbjct: 61  PDTFIWNTMIRAYLNSQNPQESMS 84


>ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330336|gb|EFH60755.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 547

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
 Frame = -2

Query: 240 MSILQESTKFDHLIQIH------AYVRNNFILAKLLRQIFSCSSLKNLQYARSIFDENQS 79
           +S L+       L Q+H      + +RN   L++L+    +C    NL YARS+F+    
Sbjct: 9   LSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 68

Query: 78  PDTFIWNTMIRAYLNVPNPQESVTF 4
           P  +IWN+MIR Y N PNP +++ F
Sbjct: 69  PSVYIWNSMIRGYSNSPNPDKALIF 93


>ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
           gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g05240 gi|332640689|gb|AEE74210.1|
           mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
 Frame = -2

Query: 240 MSILQESTKFDHLIQIH------AYVRNNFILAKLLRQIFSCSSLKNLQYARSIFDENQS 79
           +S L+       L Q+H      + +RN   L++L+    +C    NL YARS+F+    
Sbjct: 10  LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69

Query: 78  PDTFIWNTMIRAYLNVPNPQESVTF 4
           P  +IWN+MIR Y N PNP +++ F
Sbjct: 70  PSVYIWNSMIRGYSNSPNPDKALIF 94


>gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
 Frame = -2

Query: 240 MSILQESTKFDHLIQIH------AYVRNNFILAKLLRQIFSCSSLKNLQYARSIFDENQS 79
           +S L+       L Q+H      + +RN   L++L+    +C    NL YARS+F+    
Sbjct: 10  LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69

Query: 78  PDTFIWNTMIRAYLNVPNPQESVTF 4
           P  +IWN+MIR Y N PNP +++ F
Sbjct: 70  PSVYIWNSMIRGYSNSPNPDKALIF 94