BLASTX nr result
ID: Coptis25_contig00026657
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00026657
(1086 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] 156 1e-35
emb|CBI32919.3| unnamed protein product [Vitis vinifera] 153 8e-35
ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|2... 147 4e-33
ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thalia... 142 1e-31
ref|NP_567422.1| F-box/LRR-repeat protein [Arabidopsis thaliana]... 142 1e-31
>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
Length = 607
Score = 156 bits (394), Expect = 1e-35
Identities = 113/327 (34%), Positives = 168/327 (51%), Gaps = 23/327 (7%)
Frame = +2
Query: 122 GQNSGEHEDRINRLPDTMLTYIISFLPTKNAVGTSVLAKRWKNLWASVPVLDFDDTLIL- 298
G E D I+ LPD +L +I+SFLPTK AVGTS+L+KRW+ LWASVP+LDFDD L L
Sbjct: 2 GSEYEESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLN 61
Query: 299 -XXXXXXXXXXXXFMNFVDRVLHLHDLPNIQKFSLKCLDTRDASRIDSWITTALKHRVEE 475
F NFVD VL ++ I+KF L D + + SWI AL+ RV+E
Sbjct: 62 PSTLVELEERIIMFQNFVDGVLRHSEVSCIKKFRLGYRD-NNLDSVYSWICIALERRVQE 120
Query: 476 IFLNLKLDNACLLPSSFFICESLKTLKITGDFYEDVDYIYKIPSCIRWSSLKFLNLDSLR 655
+ L+L +D LP FFIC++L +K++ + D IP+ + SLK L+L S+
Sbjct: 121 LDLHLLIDWRVELPPMFFICKTLVVVKLSCALFLD------IPTTVWLPSLKALHLKSVE 174
Query: 656 LFSDRSTHQVSLCCPILEKLVLKFIEWWNIQSFSISAPALQ--RCTMTYNDWGHGCATE- 826
D S ++ CP+LE+LV++ E N ++S P+L+ R + + H E
Sbjct: 175 YSDDDSIQKLLSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQED 234
Query: 827 ------VHAENITYLKLRSTMVNELSLHNLSSLATAYIDICSSAE------------IGN 952
V A N+ YL + + + + +L SL A+ID+ +E
Sbjct: 235 QDYKVVVDAPNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHG 294
Query: 953 RMSKVLQAVCNVKDLTFTDYAIAGSSG 1033
+ ++L + NVK L+ T + SG
Sbjct: 295 PIYELLGRISNVKCLSLTGVTLDSLSG 321
>emb|CBI32919.3| unnamed protein product [Vitis vinifera]
Length = 411
Score = 153 bits (386), Expect = 8e-35
Identities = 106/317 (33%), Positives = 154/317 (48%), Gaps = 14/317 (4%)
Frame = +2
Query: 134 GEHEDRINRLPDTMLTYIISFLPTKNAVGTSVLAKRWKNLWASVPVLDFDDTLIL--XXX 307
G+ DRI+ LPD +L +IISFLPTK AVGTSVL+KRW+ LWAS+P LDFDD L+L
Sbjct: 6 GKSRDRISNLPDAVLCHIISFLPTKFAVGTSVLSKRWRYLWASIPNLDFDDDLLLDRDKP 65
Query: 308 XXXXXXXXXFMNFVDRVLHLHDLPNIQKFSLKCLDTRDASRIDSWITTALKHRVEEIFLN 487
F NFVD+VL + I+KF LKC D S ++SWI TAL+ V+E+ L
Sbjct: 66 IGDSERSICFKNFVDKVLLHGSISCIRKFRLKCSDHELDSAVNSWICTALERNVQELDLY 125
Query: 488 LKLDNACLLPSSFFICESLKTLKITGDFYEDVDYIYKIPSCIRWSSLKFLNLDSLRLFSD 667
+ LP FF C++L LK+
Sbjct: 126 FDTEYPIELPPKFFFCKTLVVLKL------------------------------------ 149
Query: 668 RSTHQVSLCCPILEKLVLKFIEWWNIQS---FSISAPALQRCTMTYNDWGHGCATEVHAE 838
CP+LE+LV IE W + F++SAP L+ + ++ + V A
Sbjct: 150 ---------CPVLEELV---IERWRLDEQWVFNVSAPTLKSLAIYFSKY----KLVVDAP 193
Query: 839 NITYLKLRSTMVNELSLHNLSSLATAYIDICSSAE-------IGNRMSKVLQAVCNVKDL 997
N+ YL + + + + NLSSL AY+++ + R+ ++L+ + NVK L
Sbjct: 194 NLEYLSITDFVSEDYLMSNLSSLVKAYVNVGPTIRGIDDQILYRGRIYELLRGISNVKHL 253
Query: 998 TFTDYAIAGSSG--CGF 1042
+ + + SG CG+
Sbjct: 254 SLSGETLHSLSGMFCGY 270
>ref|XP_002316602.1| predicted protein [Populus trichocarpa] gi|222859667|gb|EEE97214.1|
predicted protein [Populus trichocarpa]
Length = 460
Score = 147 bits (371), Expect = 4e-33
Identities = 107/323 (33%), Positives = 161/323 (49%), Gaps = 11/323 (3%)
Frame = +2
Query: 71 MDASSSVPTSKKRKLGEGQNSGEHEDRINRLPDTMLTYIISFLPTKNAVGTSVLAKRWKN 250
M A S +K++KL + + E I LPD +L +I+SFL T+ AV TS+L+K+W +
Sbjct: 1 MKAKSLTRKTKRKKLKAEKETDSGEKSIGNLPDALLEHILSFLSTEAAVRTSILSKKWLH 60
Query: 251 LWASVPVLDFDDTLILXXXXXXXXXXXXFMNFVDRVLHLHDLPNIQKFSLKCLDTRDASR 430
LW S L F FM+FVDRVL L NI +F L C D SR
Sbjct: 61 LWKSTTNLTF--------FGLKSPKRKLFMDFVDRVLALRGPSNIVQFYLSCEVKDDPSR 112
Query: 431 IDSWITTALKHRVEEIFLNLK-LDNACLLPSSFFICESLKTLKITGDFYEDVDYIYKIPS 607
+ +WI+ A+ V++++L L+ + + +LP F CE+L L+I ++ YI K+PS
Sbjct: 113 VGTWISAAVNRNVKDLYLELRDFEASFVLPHCLFNCETLTELEI------NMPYILKLPS 166
Query: 608 CIRWSSLKFLNLDSLRLFSDRSTHQVSLCCPILEKLVLKFIEWWNIQSFSISAPALQR-- 781
I S LK LNL + D ST Q+ P L +L + W N+ + SISAP LQ
Sbjct: 167 SISLSCLKILNLYEVIFTDDHSTQQL-FSLPNLVELEIHECNWMNLVAVSISAPKLQSLD 225
Query: 782 ----CTMTYNDWGHGCATEVHAENITYLKLRSTMVNELSLHNLSSLATAYIDICSSA--- 940
C + G GC + ++ + T+ N+ L+ SS+ I I S+A
Sbjct: 226 IHEPCQSSPASLG-GCHVRIFGTHLADFTIIGTLSNDYCLYE-SSVVETCISIFSAADKP 283
Query: 941 -EIGNRMSKVLQAVCNVKDLTFT 1006
+ R SK+L+ + + + L T
Sbjct: 284 RQTAYRASKLLEGISSAQSLCLT 306
>ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
gi|332657973|gb|AEE83373.1| F-box/LRR-repeat protein
[Arabidopsis thaliana]
Length = 443
Score = 142 bits (359), Expect = 1e-31
Identities = 101/301 (33%), Positives = 151/301 (50%), Gaps = 17/301 (5%)
Frame = +2
Query: 146 DRINRLPDTMLTYIISFLPTKNAVGTSVLAKRWKNLWASVPVLDFDDTLILXXXXXXXXX 325
D I+ LPD + ++I+SFLPTK A TSVL+K+W+ L+A VP LD DD++ L
Sbjct: 8 DVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENETEIS 67
Query: 326 XXXFMNFVDRVLHLHDLPNIQKFSLKCLDTRDASRIDSWITTALKHRVEEIFLNLKLDNA 505
FM+FVDRVL L + KFSLK D D RI WI L+ V ++ L+L L++
Sbjct: 68 TS-FMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLNLESE 126
Query: 506 CLLPSSFFICESLKTLKITGDFYEDVDYIYKIPSCIRWSSLKFLNLDSLRLFSDRSTHQV 685
LLPS ++C++L LK+ Y +D + LK L +++ F +
Sbjct: 127 FLLPSQVYLCKTLVWLKLRFGLYPTIDV-----EDVHLPKLKTLYIEATH-FEEHGVGLT 180
Query: 686 SLC--CPILEKLVLKFIEWWNIQSFSISAPALQRCTMTYNDWGH-GCATEVHAENITYLK 856
L CP+LE LVL I W+ S+S P L+R ++ + + + N+ YLK
Sbjct: 181 KLLSGCPMLEDLVLDDISWFIWDFASVSVPTLKRLRFSWQERDEFPKSVLLDTPNLVYLK 240
Query: 857 LRSTMVNELSLHNLSSLATAYIDI--------------CSSAEIGNRMSKVLQAVCNVKD 994
T+ + NL SL A+ID+ + +GN +++ +CNVK
Sbjct: 241 FTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLINYHQGYGENDMVGNATDFIMR-ICNVKT 299
Query: 995 L 997
L
Sbjct: 300 L 300
>ref|NP_567422.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
gi|75245750|sp|Q8L7H1.1|FBL75_ARATH RecName:
Full=F-box/LRR-repeat protein At4g14103
gi|22136642|gb|AAM91640.1| unknown protein [Arabidopsis
thaliana] gi|332657972|gb|AEE83372.1| F-box/LRR-repeat
protein [Arabidopsis thaliana]
Length = 381
Score = 142 bits (359), Expect = 1e-31
Identities = 101/301 (33%), Positives = 151/301 (50%), Gaps = 17/301 (5%)
Frame = +2
Query: 146 DRINRLPDTMLTYIISFLPTKNAVGTSVLAKRWKNLWASVPVLDFDDTLILXXXXXXXXX 325
D I+ LPD + ++I+SFLPTK A TSVL+K+W+ L+A VP LD DD++ L
Sbjct: 8 DVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENETEIS 67
Query: 326 XXXFMNFVDRVLHLHDLPNIQKFSLKCLDTRDASRIDSWITTALKHRVEEIFLNLKLDNA 505
FM+FVDRVL L + KFSLK D D RI WI L+ V ++ L+L L++
Sbjct: 68 TS-FMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLNLESE 126
Query: 506 CLLPSSFFICESLKTLKITGDFYEDVDYIYKIPSCIRWSSLKFLNLDSLRLFSDRSTHQV 685
LLPS ++C++L LK+ Y +D + LK L +++ F +
Sbjct: 127 FLLPSQVYLCKTLVWLKLRFGLYPTIDV-----EDVHLPKLKTLYIEATH-FEEHGVGLT 180
Query: 686 SLC--CPILEKLVLKFIEWWNIQSFSISAPALQRCTMTYNDWGH-GCATEVHAENITYLK 856
L CP+LE LVL I W+ S+S P L+R ++ + + + N+ YLK
Sbjct: 181 KLLSGCPMLEDLVLDDISWFIWDFASVSVPTLKRLRFSWQERDEFPKSVLLDTPNLVYLK 240
Query: 857 LRSTMVNELSLHNLSSLATAYIDI--------------CSSAEIGNRMSKVLQAVCNVKD 994
T+ + NL SL A+ID+ + +GN +++ +CNVK
Sbjct: 241 FTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLINYHQGYGENDMVGNATDFIMR-ICNVKT 299
Query: 995 L 997
L
Sbjct: 300 L 300