BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026642
         (627 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17841.3| unnamed protein product [Vitis vinifera]              138   7e-31
ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subu...   134   2e-29
ref|XP_002282796.1| PREDICTED: replication factor A protein 2 [V...   132   5e-29
ref|XP_004136317.1| PREDICTED: replication protein A 32 kDa subu...   125   8e-27
emb|CAJ13715.1| putative replication factor A [Capsicum chinense]     120   2e-25

>emb|CBI17841.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score =  138 bits (348), Expect = 7e-31
 Identities = 76/144 (52%), Positives = 94/144 (65%)
 Frame = -3

Query: 625 RPVTNFNEIAYHFIECIYVHLYNSKLQMKGSAQTQPLATNASTGRNLSMGYQGAGSTGYQ 446
           RPVT+FNEIA HFIECIYVH+YN+K +++    TQ   TN + G  L          GYQ
Sbjct: 145 RPVTDFNEIASHFIECIYVHIYNTKSRVQAGGPTQSHVTNPAIGTPLK---------GYQ 195

Query: 445 GAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAGVHINELAQHLKVPLQKIRESI 266
            + PNQ S Q  +  G+ G  ++V+DYLQ P +LA D GV  +ELAQ L VP+ KI ESI
Sbjct: 196 ASQPNQFSGQYGA--GLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQLNVPVDKIMESI 253

Query: 265 GLLENEGVIYTTIDENHYKSALNG 194
             LE EG+IY+TIDE HYKS  NG
Sbjct: 254 RSLEEEGLIYSTIDEWHYKSTGNG 277


>ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subunit [Vitis vinifera]
          Length = 275

 Score =  134 bits (336), Expect = 2e-29
 Identities = 76/144 (52%), Positives = 93/144 (64%)
 Frame = -3

Query: 625 RPVTNFNEIAYHFIECIYVHLYNSKLQMKGSAQTQPLATNASTGRNLSMGYQGAGSTGYQ 446
           RPVT+FNEIA HFIECIYVH+YN+K +  G  Q+    TN + G  L          GYQ
Sbjct: 145 RPVTDFNEIASHFIECIYVHIYNTKSRAGGPTQSH--VTNPAIGTPLK---------GYQ 193

Query: 445 GAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAGVHINELAQHLKVPLQKIRESI 266
            + PNQ S Q  +  G+ G  ++V+DYLQ P +LA D GV  +ELAQ L VP+ KI ESI
Sbjct: 194 ASQPNQFSGQYGA--GLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQLNVPVDKIMESI 251

Query: 265 GLLENEGVIYTTIDENHYKSALNG 194
             LE EG+IY+TIDE HYKS  NG
Sbjct: 252 RSLEEEGLIYSTIDEWHYKSTGNG 275


>ref|XP_002282796.1| PREDICTED: replication factor A protein 2 [Vitis vinifera]
           gi|296081770|emb|CBI20775.3| unnamed protein product
           [Vitis vinifera]
          Length = 268

 Score =  132 bits (332), Expect = 5e-29
 Identities = 73/144 (50%), Positives = 95/144 (65%)
 Frame = -3

Query: 625 RPVTNFNEIAYHFIECIYVHLYNSKLQMKGSAQTQPLATNASTGRNLSMGYQGAGSTGYQ 446
           RPVTNF+EIA+HFIE I++HL NSK ++   A TQPL+ +  T            STGYQ
Sbjct: 139 RPVTNFDEIAFHFIEVIHLHLKNSKTRLPSDALTQPLSASVKTE-----------STGYQ 187

Query: 445 GAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAGVHINELAQHLKVPLQKIRESI 266
               +Q+S Q  S DG+ G  +MVLDYLQ P+N   + G+H +EL+Q LK+  +KI ESI
Sbjct: 188 -TPSSQLSAQ--SVDGVKGLDQMVLDYLQQPSNYDREKGIHRDELSQQLKISTEKIMESI 244

Query: 265 GLLENEGVIYTTIDENHYKSALNG 194
             LE EG+IY+TIDE HYKS  +G
Sbjct: 245 RTLEEEGLIYSTIDEFHYKSTTSG 268


>ref|XP_004136317.1| PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis
           sativus] gi|449519474|ref|XP_004166760.1| PREDICTED:
           replication protein A 32 kDa subunit A-like [Cucumis
           sativus]
          Length = 271

 Score =  125 bits (313), Expect = 8e-27
 Identities = 67/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
 Frame = -3

Query: 625 RPVTNFNEIAYHFIECIYVHLYNSKLQ-MKGSAQTQPLATNASTGRNLSMGYQGAGSTGY 449
           RPVTNF+EI +HFIECI+ HL NSKLQ +KG+  TQ   +++     +  G  G  +T  
Sbjct: 135 RPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTS- 193

Query: 448 QGAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAGVHINELAQHLKVPLQKIRES 269
             A+P++    Q++ D      ++VLDYLQLP+++A + G+H +EL+Q LK+P++KI +S
Sbjct: 194 -SAIPSE----QHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKLPMEKILDS 248

Query: 268 IGLLENEGVIYTTIDENHYKSA 203
           I  LE+EG+IY+TIDE H+KSA
Sbjct: 249 IRSLEDEGLIYSTIDEFHFKSA 270


>emb|CAJ13715.1| putative replication factor A [Capsicum chinense]
          Length = 299

 Score =  120 bits (301), Expect = 2e-25
 Identities = 65/143 (45%), Positives = 88/143 (61%)
 Frame = -3

Query: 625 RPVTNFNEIAYHFIECIYVHLYNSKLQMKGSAQTQPLATNASTGRNLSMGYQGAGSTGYQ 446
           RPV ++NEIA HF E IYVH YNS+L+ +  +        +S+      GYQ + S  + 
Sbjct: 166 RPVDDYNEIASHFAEVIYVHSYNSRLRKQQDSSFMSAQVPSSSFNTPLKGYQASASNQFP 225

Query: 445 GAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAGVHINELAQHLKVPLQKIRESI 266
           G          ++ DGI G  KMVLDYLQ P+ LA + GVH NELAQ L+VP +KI  ++
Sbjct: 226 G----------FNMDGIGGVHKMVLDYLQQPSCLALEKGVHRNELAQQLRVPSEKIMGAM 275

Query: 265 GLLENEGVIYTTIDENHYKSALN 197
             LE+EG++Y+TID+ HYKS  N
Sbjct: 276 EALESEGLVYSTIDDFHYKSTGN 298