BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026598
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002867315.1| pentatricopeptide repeat-containing protein ...   139   2e-31
sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-c...   137   1e-30
ref|NP_194836.1| pentatricopeptide repeat-containing protein [Ar...   137   1e-30
ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
ref|XP_003593286.1| Pentatricopeptide repeat-containing protein ...   134   6e-30

>ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297313151|gb|EFH43574.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 598

 Score =  139 bits (351), Expect = 2e-31
 Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3   NEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSY-LKHGKQI 179
           NEVSWTAMI+GC  N  Y + +D FRAM  E  RPNRVTL++VLPAC EL Y L+  K+I
Sbjct: 215 NEVSWTAMISGCVANYNYEVGIDFFRAMQRENLRPNRVTLLSVLPACVELGYGLRLVKEI 274

Query: 180 HGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGD 359
           HG++ R    S+ +L AA + MYC+C G+   + L+FE S+ RDVVMWSSMI  Y++NGD
Sbjct: 275 HGFSFRHGFHSDDRLIAAFMTMYCRC-GSVSLSRLLFETSKVRDVVMWSSMISGYAENGD 333

Query: 360 SANA 371
            + A
Sbjct: 334 CSEA 337



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 47/121 (38%), Positives = 67/121 (55%)
 Frame = +3

Query: 9   VSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGY 188
           V W++MI+G   N   S +++L   M  EG  PN VTL+AV+ AC   + LK    +H  
Sbjct: 319 VMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVVSACTHSASLKIASTVHSQ 378

Query: 189 AIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDSAN 368
            ++    S   L+ ALIDMY KC G+  AA  +F     +D+V WSSMI +Y  +G  + 
Sbjct: 379 ILKCGFMSHILLSNALIDMYAKC-GSLPAAREVFYELNEKDLVSWSSMINAYGLHGHGSE 437

Query: 369 A 371
           A
Sbjct: 438 A 438


>sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31070, mitochondrial; Flags: Precursor
          Length = 624

 Score =  137 bits (344), Expect = 1e-30
 Identities = 65/120 (54%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
 Frame = +3

Query: 3   NEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSY-LKHGKQI 179
           NEVSWTAMI+GC  N+ Y + +DLFRAM  E  RPNRVTL++VLPAC EL+Y     K+I
Sbjct: 226 NEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEI 285

Query: 180 HGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGD 359
           HG++ R  C ++ +L AA + MYC+C G    + ++FE S+ RDVVMWSSMI  Y++ GD
Sbjct: 286 HGFSFRHGCHADERLTAAFMTMYCRC-GNVSLSRVLFETSKVRDVVMWSSMISGYAETGD 344



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/121 (35%), Positives = 62/121 (51%)
 Frame = +3

Query: 9   VSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGY 188
           V W++MI+G       S  ++L   M  EG   N VTL+A++ AC   + L     +H  
Sbjct: 330 VMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQ 389

Query: 189 AIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDSAN 368
            ++    S   L  ALIDMY KC G+  AA  +F     +D+V WSSMI +Y  +G  + 
Sbjct: 390 ILKCGFMSHILLGNALIDMYAKC-GSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSE 448

Query: 369 A 371
           A
Sbjct: 449 A 449


>ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis
           thaliana] gi|7270009|emb|CAB79825.1| putative protein
           [Arabidopsis thaliana] gi|332660453|gb|AEE85853.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 613

 Score =  137 bits (344), Expect = 1e-30
 Identities = 65/120 (54%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
 Frame = +3

Query: 3   NEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSY-LKHGKQI 179
           NEVSWTAMI+GC  N+ Y + +DLFRAM  E  RPNRVTL++VLPAC EL+Y     K+I
Sbjct: 215 NEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEI 274

Query: 180 HGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGD 359
           HG++ R  C ++ +L AA + MYC+C G    + ++FE S+ RDVVMWSSMI  Y++ GD
Sbjct: 275 HGFSFRHGCHADERLTAAFMTMYCRC-GNVSLSRVLFETSKVRDVVMWSSMISGYAETGD 333



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/121 (35%), Positives = 62/121 (51%)
 Frame = +3

Query: 9   VSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGY 188
           V W++MI+G       S  ++L   M  EG   N VTL+A++ AC   + L     +H  
Sbjct: 319 VMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQ 378

Query: 189 AIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDSAN 368
            ++    S   L  ALIDMY KC G+  AA  +F     +D+V WSSMI +Y  +G  + 
Sbjct: 379 ILKCGFMSHILLGNALIDMYAKC-GSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSE 437

Query: 369 A 371
           A
Sbjct: 438 A 438


>ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  135 bits (341), Expect = 3e-30
 Identities = 67/123 (54%), Positives = 84/123 (68%)
 Frame = +3

Query: 3   NEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIH 182
           N VSWT MI+GC  ++ Y  +   FRAM  EG  PNRVT IA+L ACAE  ++KHGK+IH
Sbjct: 218 NVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIALLSACAEPGFVKHGKEIH 277

Query: 183 GYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDS 362
           GYA R   ES    ++AL++MYC+C      A LIFE S  RDVV+WSS+IGS+S+ GDS
Sbjct: 278 GYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFSRRGDS 337

Query: 363 ANA 371
             A
Sbjct: 338 FKA 340



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 44/116 (37%), Positives = 60/116 (51%)
 Frame = +3

Query: 9   VSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGY 188
           V W+++I   +       +L LF  M  E   PN VTL+AV+ AC  LS LKHG  +HGY
Sbjct: 322 VLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGY 381

Query: 189 AIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNG 356
             +        +  ALI+MY KC    G+  +  E    RD V WSS+I +Y  +G
Sbjct: 382 IFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLE-MPNRDNVTWSSLISAYGLHG 436


>ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482334|gb|AES63537.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  134 bits (338), Expect = 6e-30
 Identities = 65/123 (52%), Positives = 86/123 (69%)
 Frame = +3

Query: 3   NEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIH 182
           NEVSWTA+I+GC  N+ Y ++L  +R M VEG  PNRVTLIA+L ACA   ++K+GK+IH
Sbjct: 237 NEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIH 296

Query: 183 GYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDS 362
           GYA R   +S    + ALI +YC+C  +   A  IFE S  RDVV+WSS+IGSY++ G+S
Sbjct: 297 GYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGES 356

Query: 363 ANA 371
             A
Sbjct: 357 DKA 359



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 45/116 (38%), Positives = 60/116 (51%)
 Frame = +3

Query: 9   VSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGY 188
           V W+++I           +L LF  M  E   PN VTL+AV+ AC  LS  KHG  IHGY
Sbjct: 341 VLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGY 400

Query: 189 AIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNG 356
            ++        +  ALI+MY KC G+   +  IF     RD V W+SMI +Y  +G
Sbjct: 401 ILKFGIGFSIFVCNALINMYAKC-GSLDDSRKIFLEMPSRDSVTWNSMISAYGLHG 455