BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026549
         (616 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                            122   5e-26
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   119   4e-25
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   108   8e-25
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...   108   8e-25
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   117   8e-25

>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score =  122 bits (306), Expect = 5e-26
 Identities = 66/181 (36%), Positives = 107/181 (59%)
 Frame = -3

Query: 548 SVLFNGGPIGFFHVERGLRQGDLLSPLLFGFAEECISRSIHIMAENNKIKRMVQNSIHTS 369
           S+  NG   G F  +RGLRQGD LSP LF  A E +SR +   A   +++ +     +  
Sbjct: 3   SININGELTGLFKGKRGLRQGDPLSPYLFIIAMEVLSRKLDQAASIGQLQ-LHSKCANPL 61

Query: 368 LTHLMFADNIFLFCNANKRTLRNLMGILDRYQSTYGQKISKAKCKNFLSKMHHHRKEDIK 189
           LTHL+FAD++ +F  A++++++ +   L+ +    G +++  KC+ FL  +    K+++ 
Sbjct: 62  LTHLIFADDLVIFSKASRQSMQAVQNCLNWFGRNSGLEVNTGKCEMFLGGLTDSEKQELS 121

Query: 188 EMLGIKEGGLPEKYLGVPLFQGRITKDHMTPLIEKIRARITSWVGKSLSF*GKTLLVKHV 9
             +GI  G  P KYLG+P+   R+TK    PL+EKIRA++++W  K LS+ GK  LV  V
Sbjct: 122 SCMGITLGNFPMKYLGLPVNTHRLTKADYEPLLEKIRAKVSNWSSKLLSYAGKIQLVSVV 181

Query: 8   L 6
           +
Sbjct: 182 I 182


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  119 bits (298), Expect = 4e-25
 Identities = 71/184 (38%), Positives = 103/184 (55%)
 Frame = -3

Query: 554  SLSVLFNGGPIGFFHVERGLRQGDLLSPLLFGFAEECISRSIHIMAENNKIKRMVQNSIH 375
            S SV  NG   GFF  ERGLRQG  LSP L+      +S  +   A   KI    +   +
Sbjct: 784  SFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCR-N 842

Query: 374  TSLTHLMFADNIFLFCNANKRTLRNLMGILDRYQSTYGQKISKAKCKNFLSKMHHHRKED 195
             +LTHL FAD+I +F +   ++++  + I +++ +    KIS  K   F++ +  + K  
Sbjct: 843  MNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTS 902

Query: 194  IKEMLGIKEGGLPEKYLGVPLFQGRITKDHMTPLIEKIRARITSWVGKSLSF*GKTLLVK 15
            I +    + G LP KYLG+PL   R+T+    PL+EKIRARITSW  + LSF G+  L+K
Sbjct: 903  ILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIK 962

Query: 14   HVLN 3
             VL+
Sbjct: 963  SVLS 966


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  108 bits (271), Expect(2) = 8e-25
 Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 1/184 (0%)
 Frame = -3

Query: 557  LSLSVLFNGGPIGFFHVERGLRQGDLLSPLLFGFAEECISRSIHIMAENNKIKRMVQNSI 378
            ++ SVL NG P G    +RG+RQGD LSP LF    + ++  I        I+ +   + 
Sbjct: 995  VNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNG 1054

Query: 377  HTSLTHLMFADNIFLFCNANKRTLRNLMGILDRYQSTYGQKISKAKCK-NFLSKMHHHRK 201
               +THL FAD+   FC +N R  + L  + D Y+   GQKI+ +K    F S++H   +
Sbjct: 1055 VPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQ 1114

Query: 200  EDIKEMLGIKEGGLPEKYLGVPLFQGRITKDHMTPLIEKIRARITSWVGKSLSF*GKTLL 21
              +K +LGI+  G   KYLG+P   GR  +D    +IE+++ R +SW  K LS  GK ++
Sbjct: 1115 NRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIM 1174

Query: 20   VKHV 9
            +K V
Sbjct: 1175 LKSV 1178



 Score = 30.4 bits (67), Expect(2) = 8e-25
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 610  FGFHEKWITWIKGAITSNSLSL 545
            FGF E WI WI GA+ S + S+
Sbjct: 978  FGFSETWIKWIMGAVKSVNYSV 999


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score =  108 bits (271), Expect(2) = 8e-25
 Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 1/184 (0%)
 Frame = -3

Query: 557  LSLSVLFNGGPIGFFHVERGLRQGDLLSPLLFGFAEECISRSIHIMAENNKIKRMVQNSI 378
            ++ SVL NG P G    +RG+RQGD LSP LF    + ++  I        I+ +   + 
Sbjct: 975  VNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNG 1034

Query: 377  HTSLTHLMFADNIFLFCNANKRTLRNLMGILDRYQSTYGQKISKAKCK-NFLSKMHHHRK 201
               +THL FAD+   FC +N R  + L  + D Y+   GQKI+ +K    F S++H   +
Sbjct: 1035 VPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQ 1094

Query: 200  EDIKEMLGIKEGGLPEKYLGVPLFQGRITKDHMTPLIEKIRARITSWVGKSLSF*GKTLL 21
              +K +LGI+  G   KYLG+P   GR  +D    +IE+++ R +SW  K LS  GK ++
Sbjct: 1095 NRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIM 1154

Query: 20   VKHV 9
            +K V
Sbjct: 1155 LKSV 1158



 Score = 30.4 bits (67), Expect(2) = 8e-25
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 610  FGFHEKWITWIKGAITSNSLSL 545
            FGF E WI WI GA+ S + S+
Sbjct: 958  FGFSETWIKWIMGAVKSVNYSV 979


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  117 bits (292), Expect(2) = 8e-25
 Identities = 64/180 (35%), Positives = 95/180 (52%)
 Frame = -3

Query: 545 VLFNGGPIGFFHVERGLRQGDLLSPLLFGFAEECISRSIHIMAENNKIKRMVQNSIHTSL 366
           +  NG   GFF+  RG+RQGD LSPLLF   EE +SRSI I+A+   I  +  +  +   
Sbjct: 364 ISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLP 423

Query: 365 THLMFADNIFLFCNANKRTLRNLMGILDRYQSTYGQKISKAKCKNFLSKMHHHRKEDIKE 186
            H  + D++ +FC A   +L  L  +  RY    GQ ++  K   F   +   R  +I  
Sbjct: 424 FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVN 483

Query: 185 MLGIKEGGLPEKYLGVPLFQGRITKDHMTPLIEKIRARITSWVGKSLSF*GKTLLVKHVL 6
           +LG   G LP  YLG P+F+G+    H  P+ +K++A++  W    LS  G+  LVK V+
Sbjct: 484 ILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVV 543



 Score = 22.3 bits (46), Expect(2) = 8e-25
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 610 FGFHEKWITWIKGAITSNSL 551
           FGF+E +  WIK  + S+ +
Sbjct: 343 FGFNELFCNWIKTILHSSKM 362