BLASTX nr result
ID: Coptis25_contig00026542
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00026542
(1576 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin... 138 5e-30
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 133 1e-28
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 131 6e-28
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 129 2e-27
ref|XP_002510612.1| conserved hypothetical protein [Ricinus comm... 124 5e-26
>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
Length = 393
Score = 138 bits (347), Expect = 5e-30
Identities = 130/461 (28%), Positives = 187/461 (40%), Gaps = 30/461 (6%)
Frame = -2
Query: 1461 MTADWSQLPQPLLELIYRRL-FPSDHLGFSSVCSSWRLVAIEEGRYLPHQFVGLIASGVT 1285
M +W +LP LLE I + L D+L F SVC SWR + +LP Q L+ S
Sbjct: 1 MGVEWGELPPELLESISKTLTIYVDYLRFRSVCRSWRSSVPKIPLHLPPQLPWLMLS--- 57
Query: 1284 MDSETRRLFEPLQCDYKNSNRAPLNLSVPHRYYCCGASFGWLVLVDESLDMQLLDPISGE 1105
RR F L + + LN HR CG+S GWLV++DE+ ++LL+P++
Sbjct: 58 -----RRAFFDLSLNKTHL----LNPQPSHRTRICGSSHGWLVMLDETPQIRLLNPLTRA 108
Query: 1104 K-----IQXXXXXXXXXXXXSFRNF-------GKYS----------VSKAILSCAPSRST 991
+ R + G Y+ + K +LS +P+ +
Sbjct: 109 TRPLPPLHAFPNVVAFDHANVGREYLIQNPYGGLYAFNLRQMCNSFLGKVVLSASPTLND 168
Query: 990 SYRTIVLTICGGLRLAYCKPGDEAWTSIEFEVPREHV--DAIYYKGKFFAVYNPGGIVTI 817
+ L I G LA+C+ G ++W + E + D + Y G FFAV G I
Sbjct: 169 DFAA--LAIVGQNNLAFCRNGYDSWIFLNGEEEEMNCWEDVVNYNGLFFAVSKGGTIAVC 226
Query: 816 DFADPDHPTMTDYAPTP-PGEFFWQSRYLVESKGELFQLRRTCKFDSDNTYRSDSDDYDY 640
D + P T P F Y V S G++ L R D D+
Sbjct: 227 DAGEGCFPPRVSIIQTTTPFGFAGDIHYAVFSAGDMLLLIRVL-------------DQDF 273
Query: 639 FGVAGGDGEEVLGGQSQXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCYRTVRFKVFKFRN 460
AG + + V YRTV F+VFK
Sbjct: 274 SDHAGEESDLV------------------------------------YRTVGFEVFKMNW 297
Query: 459 CPGCNNLEAWQKVESIGDNAFFVGGCNSSFSVSVSDFLGCKPNSIYFTDSMVPYDYMPEP 280
L WQ+VE++G+ FVGG NSS S SDF+GC + IYFTD +
Sbjct: 298 -----GLLTWQRVETLGERVLFVGG-NSSLSFCASDFVGCSADCIYFTDDYSESNDDDAC 351
Query: 279 IRHDIGIFSLEDKSVKEIYPID----SKPVWPPSFWFTPVP 169
+HD+G+F L DKS++ + + S+ WP W +P P
Sbjct: 352 GKHDLGVFRLRDKSIEPLPCFNQNSCSRLRWPLPIWVSPNP 392
>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 398
Score = 133 bits (335), Expect = 1e-28
Identities = 123/460 (26%), Positives = 195/460 (42%), Gaps = 29/460 (6%)
Frame = -2
Query: 1461 MTADWSQLPQPLLELIYRRL-FPSDHLGFSSVCSSWRLVAIEEGRYLPHQFVGL-IASGV 1288
M DWSQLP L+E+I + L SD+L +VC +WR + +LP Q L +
Sbjct: 1 MIMDWSQLPPELIEIISKGLTIYSDYLYSRAVCHAWRFSIPKTPNHLPPQLPWLMLPQSQ 60
Query: 1287 TMDSETRRLFEPLQCDYKNSNRAPLNLSVPHRYYCCGASFGWLVLVDESLDMQLLDPISG 1108
+ +++RR F L + + P V +R CG+S GWL+++D++ + L++P++
Sbjct: 61 SQSNQSRRAFFSLSTNKFHFLNLP---EVSYRKRHCGSSHGWLMILDDTPTILLINPLTR 117
Query: 1107 EKIQXXXXXXXXXXXXS----------------------FRNFGKYSVSKAILSCAPSRS 994
K+ R + K +LS +P +
Sbjct: 118 AKLSLPPLSSFPNVISFNYSDIGREYALRNLLGERVTVSLRQMRDSFIRKVVLSSSPLKD 177
Query: 993 TSYRTIVLTICGGLR-LAYCKPGDEAWTSIEFEVPREHVDAIYYKGKFFAVYNPGGIVTI 817
++ +V+ I LAYC+ GD++W+ +E D I+ G F+AV G IV
Sbjct: 178 NNF--VVIAILNQTDDLAYCRNGDKSWSLVE-NARSFCEDVIFVNGMFYAVNKAGQIVIC 234
Query: 816 DFADPDHPTMTDYAPTPPGEFFWQSRYLVESKGELFQLRRTCKFDSDNTYRSDSDDYDYF 637
D + D P ++ + TP + +YLV S EL + R D Y D D +
Sbjct: 235 DISS-DSPRVS-FMETPR-QAGGDMQYLVNSGDELLLVTRYL----DLEYEFDHPDMEPH 287
Query: 636 GVAGGDGEEVLGGQSQXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCYRTVRFKVFKFRNC 457
+ YRT+RF+VF+
Sbjct: 288 LI--------------------------------------------YRTIRFEVFRLDW- 302
Query: 456 PGCNNLEAWQKVESIGDNAFFVGGCNSSFSVSVSDFLGCKPNSIYFTDSMVPYDYMPEPI 277
N W ++ ++GD A F+G NSS S+S +DF GC N IY+TD + +Y
Sbjct: 303 ----NGPQWLRMSTLGDKALFIGE-NSSLSLSATDFSGCMGNCIYYTDDYLDANYDGHFG 357
Query: 276 RHDIGIFSLEDKSVKEI--YP--IDSKPVWPPSFWFTPVP 169
HD+GIF L D++++ + YP S W P W +P P
Sbjct: 358 DHDLGIFKLCDETIEPLPCYPRNFTSPLQWSPPLWVSPNP 397
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 131 bits (329), Expect = 6e-28
Identities = 123/452 (27%), Positives = 189/452 (41%), Gaps = 23/452 (5%)
Frame = -2
Query: 1455 ADWSQLPQPLLELIYRRL-FPSDHLGFSSVCSSWRLVAIEEGRYLPHQFVGLIASGVTMD 1279
ADWSQL LL+ I ++ +D++ F +VC +WR + +LP Q L+ +
Sbjct: 2 ADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQ-SQP 60
Query: 1278 SETRRLFEPLQCDYKNSNRAPLNLSVPHRYYCCGASFGWLVLVDESLDMQLLDPISGEKI 1099
T R F L + + + P HR G+S GWL+++DE+ ++ LL+P++ K+
Sbjct: 61 HHTHRPFFSLSLNKFHFLQLP---EASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSKV 117
Query: 1098 QXXXXXXXXXXXXS-FRNFGK-----------YS----------VSKAILSCAPSRSTSY 985
F + G+ Y+ + K ILS +P+ + +
Sbjct: 118 HLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPANGSDF 177
Query: 984 RTIVLTICGGLRLAYCKPGDEAWTSIEFEVPREHVDAIYYKGKFFAVYNPGGIVTIDFAD 805
+V+ G LA C+ D++WT +E + D I+++G F+AV G I D +
Sbjct: 178 IAVVILNQTG-DLALCRKSDDSWTFLE-DAQSYSEDVIFHRGLFYAVNKYGSIAVCDVSG 235
Query: 804 PDHPTMTDYAPTPPGEFFWQSRYLVESKGELFQLRRTCKFDSDNTYRSDSDDYDYFGVAG 625
P ++ P +F +YLVES EL + R D TY + D
Sbjct: 236 SS-PRVSIIEM--PQQFGGDLQYLVESGEELLLVTRYL----DLTYDVEXDQTSLI---- 284
Query: 624 GDGEEVLGGQSQXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCYRTVRFKVFKFRNCPGCN 445
YRT RF+V C +
Sbjct: 285 ------------------------------------------YRTTRFQV-----CRLDS 297
Query: 444 NLEAWQKVESIGDNAFFVGGCNSSFSVSVSDFLGCKPNSIYFTDSMVPYDYMPEPIRHDI 265
W+ V S+GD A F+G N S S+S DF GCK N IY+TD +Y D+
Sbjct: 298 KAPRWEVVSSLGDRALFLGE-NLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDL 356
Query: 264 GIFSLEDKSVKEIYPIDSKPVWPPSFWFTPVP 169
GIF+LED S++ + + WPP W TP P
Sbjct: 357 GIFNLEDGSIEPLPCSHFRIRWPPPLWVTPNP 388
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 129 bits (325), Expect = 2e-27
Identities = 124/454 (27%), Positives = 192/454 (42%), Gaps = 25/454 (5%)
Frame = -2
Query: 1455 ADWSQLPQPLLELIYRRL-FPSDHLGFSSVCSSWRLVAIEEGRYLPHQFVGLIASGVTMD 1279
ADWSQL LL+ I ++ +D++ F +VC +WR + +LP Q L+ +
Sbjct: 2 ADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQ-SQP 60
Query: 1278 SETRRLFEPLQCDYKNSNRAPLNLSVPHRYYCCGASFGWLVLVDESLDMQLLDPISGEKI 1099
T R F L + + + P HR G+S GWL+++DE+ ++ LL+P++ K+
Sbjct: 61 HHTHRPFFSLSLNKFHFLQLP---EASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSKV 117
Query: 1098 QXXXXXXXXXXXXS-FRNFGK-----------YS----------VSKAILSCAPSRSTSY 985
F + G+ Y+ + K ILS +P+ + +
Sbjct: 118 HLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPANGSDF 177
Query: 984 RTIVLTICGGLRLAYCKPGDEAWTSIEFEVPREHVDAIYYKGKFFAVYNPGGIVTIDFAD 805
+V+ G LA C+ D++WT +E + D I+++G F+AV G I D +
Sbjct: 178 IAVVILNQTG-DLALCRKSDDSWTFLE-DAQSYAEDVIFHRGLFYAVNKYGSIAVCDVSG 235
Query: 804 PDHPTMTDYAPTPPGEFFWQSRYLVESKGELFQLRRTCKFDSDNTYRSDSDDYDYFGVAG 625
P ++ P +F +YLVES EL + R D TY + D
Sbjct: 236 SS-PRVSIIEM--PQQFGGDLQYLVESGEELLLVTRYL----DLTYDVEPDQTSLI---- 284
Query: 624 GDGEEVLGGQSQXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCYRTVRFKVFKFRNCPGCN 445
YRT RF+V +
Sbjct: 285 ------------------------------------------YRTTRFQVCRL------- 295
Query: 444 NLEA--WQKVESIGDNAFFVGGCNSSFSVSVSDFLGCKPNSIYFTDSMVPYDYMPEPIRH 271
+L+A W+ V S+GD A F+G N S S+S DF GCK N IY+TD +Y
Sbjct: 296 DLKAPRWEVVSSLGDRALFLGE-NLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQ 354
Query: 270 DIGIFSLEDKSVKEIYPIDSKPVWPPSFWFTPVP 169
D+GIF+LED S++ + + WPP W TP P
Sbjct: 355 DLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTPNP 388
>ref|XP_002510612.1| conserved hypothetical protein [Ricinus communis]
gi|223551313|gb|EEF52799.1| conserved hypothetical
protein [Ricinus communis]
Length = 402
Score = 124 bits (312), Expect = 5e-26
Identities = 125/452 (27%), Positives = 193/452 (42%), Gaps = 27/452 (5%)
Frame = -2
Query: 1461 MTADWSQLPQPLLELIY-RRLFPSDHLGFSSVCSSWR-LVAIEEGRYLPHQFVGLIASGV 1288
M++ W++LP LL++I + D+L +VC SW+ +A +L Q L+
Sbjct: 1 MSSTWAELPPELLQVIADKHTNYVDYLVTRAVCGSWQSAIAKRPHNHLLCQLPFLLLP-Y 59
Query: 1287 TMDSETRRLFEPLQCDYKNSNRAPLNLSVPHRYY--CCGASFGWLVLVDESLDMQLLDPI 1114
++ RR F Y S+ L +P Y CCG+S GWL++V++S + LL+P+
Sbjct: 60 YQNNPDRRGF------YNISDDKIYVLELPEAYEKRCCGSSHGWLIMVEDSPSIFLLNPL 113
Query: 1113 SGEKIQXXXXXXXXXXXXSF-----RNFGKYSVS------------KAILSCAPSRSTSY 985
+ E+I+ RN + + KAILS PS T++
Sbjct: 114 TRERIELPALSTFSIFPTDVVFENSRNLNENFIMREKFHIRDTFIVKAILSSDPSLDTNF 173
Query: 984 RTIVLTICGGLRLAYCKPGDEAWTSIEFEV--PREHVDAIYYKGKFFAVYNPGGIVTIDF 811
+V+ LA+C+ GD AWT I+ PR + DA++ GK FAV GGI +
Sbjct: 174 MAVVIYGVNE-NLAFCRSGDAAWTVIDETTSPPRRYKDALFRAGKLFAVDQTGGISILT- 231
Query: 810 ADPDHPTMTDYAPTP--PGEFFWQSRYLVESKGELFQLRRTCKFDSDNTYRSDSDDYDYF 637
+ TM +A P ++ YL E +L C+ YR DY+
Sbjct: 232 ---EENTMIRFADPPLVSSRTGYKQWYLASYSEE--ELLIVCR------YRKVVPDYE-- 278
Query: 636 GVAGGDGEEVLGGQSQXXXXXXXXXXXXXXXXXXXXXXXXXXXLRCYRTVRFKVFKFRNC 457
Y+T RF+++K +
Sbjct: 279 ----------------------------------------------YKTERFEIYKLDD- 291
Query: 456 PGCNNLEAWQKVESIGDNAFFVGGCNSSFSVSVSDFLGCKPNSIYFTDSMVPY--DYMPE 283
W+K ES+GD F+GG N S S+S D+ CK N IYFTD + DY+ E
Sbjct: 292 ------GGWKKKESLGDKMLFLGG-NGSLSISALDYSKCKGNCIYFTDDYIRLCKDYVWE 344
Query: 282 PIRHDIGIFSLEDKSVKEIYPIDSKPVWPPSF 187
HD GI+ +ED +++ + + S P+ PSF
Sbjct: 345 --GHDYGIYDIEDGNIRSL-GLPSYPIKHPSF 373