BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026533
         (865 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   115   2e-28
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...   115   2e-28
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ...   114   8e-28
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi...   113   2e-27
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    97   2e-27

>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score =  115 bits (288), Expect(2) = 2e-28
 Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
 Frame = -2

Query: 807 ITLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGGAKVNLKTMSEF 628
           I+ VYG P    R   W+  R +     GPWL  GDFN +L  DE LG  + +   M  F
Sbjct: 107 ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHF 166

Query: 627 QELTCDLELIDLGFTGPKYTWCNNRIGKTNIKERLDHALANVDWFNIFPQAFLQHIPNAA 448
           +    D  LIDLGF GPK+TW N +   +N K RLD A+AN ++   F    ++++   +
Sbjct: 167 RSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTS 226

Query: 447 SDHLILSLNLXXXXXXXXKRP----FKFQEMWLRDASLPLRNVISNSWNMTVSG 298
           SDH  +S++L        + P    F+F+  WLR  +   R V+ NSW ++ +G
Sbjct: 227 SDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLR--AEDYREVVENSWRISSAG 278



 Score = 37.4 bits (85), Expect(2) = 2e-28
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = -3

Query: 239 WNTNTFGNVFLQMRKCERKLAEMNDFPPTPENTXXXXXXXXXXXXXXXXXXEYWRQNSRN 60
           W+  +FG+V  ++ K ERKL  +   P                           RQ SR 
Sbjct: 299 WSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRV 358

Query: 59  TKIKNGDRNT*FFHTYAS 6
             ++ GDRNT FFH  AS
Sbjct: 359 DWLREGDRNTAFFHARAS 376


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
           protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score =  115 bits (288), Expect(2) = 2e-28
 Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
 Frame = -2

Query: 807 ITLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGGAKVNLKTMSEF 628
           I+ VYG P    R   W+  R +     GPWL  GDFN +L  DE LG  + +   M  F
Sbjct: 64  ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHF 123

Query: 627 QELTCDLELIDLGFTGPKYTWCNNRIGKTNIKERLDHALANVDWFNIFPQAFLQHIPNAA 448
           +    D  LIDLGF GPK+TW N +   +N K RLD A+AN ++   F    ++++   +
Sbjct: 124 RSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTS 183

Query: 447 SDHLILSLNLXXXXXXXXKRP----FKFQEMWLRDASLPLRNVISNSWNMTVSG 298
           SDH  +S++L        + P    F+F+  WLR  +   R V+ NSW ++ +G
Sbjct: 184 SDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLR--AEDYREVVENSWRISSAG 235



 Score = 37.4 bits (85), Expect(2) = 2e-28
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = -3

Query: 239 WNTNTFGNVFLQMRKCERKLAEMNDFPPTPENTXXXXXXXXXXXXXXXXXXEYWRQNSRN 60
           W+  +FG+V  ++ K ERKL  +   P                           RQ SR 
Sbjct: 256 WSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRV 315

Query: 59  TKIKNGDRNT*FFHTYAS 6
             ++ GDRNT FFH  AS
Sbjct: 316 DWLREGDRNTAFFHARAS 333


>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  114 bits (285), Expect(2) = 8e-28
 Identities = 60/179 (33%), Positives = 92/179 (51%)
 Frame = -2

Query: 804 TLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGGAKVNLKTMSEFQ 625
           T VYG P A  R L+W   R ++     PWL+ GDFN  +   E     K +   M +F+
Sbjct: 83  TFVYGEPRAQDRHLMWSLLRRIRSNSGDPWLMIGDFNEAMWQTEHKSHRKRSESQMRDFR 142

Query: 624 ELTCDLELIDLGFTGPKYTWCNNRIGKTNIKERLDHALANVDWFNIFPQAFLQHIPNAAS 445
           E+  + +L D+GF G  +T+CN +    N+K RLD  +A+  W + FPQA + H+   +S
Sbjct: 143 EVLSECDLHDIGFQGAPWTFCNMQREGRNVKVRLDRGVASPAWSSRFPQAVITHLTTPSS 202

Query: 444 DHLILSLNLXXXXXXXXKRPFKFQEMWLRDASLPLRNVISNSWNMTVSGSPSFVLNSKL 268
           DH  L L           +  +++E+W R++SLP   VI  +W M    S    +N K+
Sbjct: 203 DHAPLLLEREETTLARPMKIMRYEEVWERESSLP--EVIQEAWTMGADASTLGDINDKM 259



 Score = 36.2 bits (82), Expect(2) = 8e-28
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = -3

Query: 248 LAIWNTNTFGNVFLQMRKCERKLAEMNDFPPTPENTXXXXXXXXXXXXXXXXXXEYWRQN 69
           L  W+ +  GNV  +++    KL E+ +     +                     +W+Q 
Sbjct: 266 LVSWSKDKIGNVRKKIKDLREKLGELRNIGLL-DTDNEVHSVKKELEEMLHREEIWWKQR 324

Query: 68  SRNTKIKNGDRNT*FFHTYASF 3
           SR T +K GD NT +FH  AS+
Sbjct: 325 SRITWLKEGDLNTRYFHLKASW 346


>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  113 bits (282), Expect(2) = 2e-27
 Identities = 59/179 (32%), Positives = 92/179 (51%)
 Frame = -2

Query: 804 TLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGGAKVNLKTMSEFQ 625
           T +YG P A  R L+W   R ++     PWL+ GDFN  +   E     K +   M +F+
Sbjct: 58  TFLYGEPRAQDRHLMWSLLRRIRSNSGDPWLMIGDFNEAMWQTEHKSHRKRSESQMRDFR 117

Query: 624 ELTCDLELIDLGFTGPKYTWCNNRIGKTNIKERLDHALANVDWFNIFPQAFLQHIPNAAS 445
           E+  + +L D+GF G  +T+CN +    N+K RLD  +A+  W + FPQA + H+   +S
Sbjct: 118 EVLSECDLHDIGFQGAPWTFCNMQREGRNVKVRLDRGVASPAWSSRFPQAVITHLTTPSS 177

Query: 444 DHLILSLNLXXXXXXXXKRPFKFQEMWLRDASLPLRNVISNSWNMTVSGSPSFVLNSKL 268
           DH  L L           +  +++E+W R++SLP   VI  +W M    S    +N K+
Sbjct: 178 DHAPLLLEREETTLARPMKIMRYEEVWERESSLP--EVIQEAWTMGADASTLGDINDKM 234



 Score = 36.2 bits (82), Expect(2) = 2e-27
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = -3

Query: 248 LAIWNTNTFGNVFLQMRKCERKLAEMNDFPPTPENTXXXXXXXXXXXXXXXXXXEYWRQN 69
           L  W+ +  GNV  +++    KL E+ +     +                     +W+Q 
Sbjct: 241 LVSWSKDKIGNVRKKIKDLREKLGELRNIGLL-DTDNEVHSVKKELEEMLHREEIWWKQR 299

Query: 68  SRNTKIKNGDRNT*FFHTYASF 3
           SR T +K GD NT +FH  AS+
Sbjct: 300 SRITWLKEGDLNTRYFHLKASW 321


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 96.7 bits (239), Expect(2) = 2e-27
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
 Frame = -2

Query: 804 TLVYGHPIASRRRLIWDHFRTVKGCCNGPWLLWGDFNAILSTDEKLGGAKVNLKTMSEFQ 625
           T +YG+P    +         +      PWL  GDFN +L   EK GG   N +    F+
Sbjct: 108 TGIYGYPEEEHKDKTGALLSALARASRRPWLCGGDFNLMLVASEKKGGDGFNSREADIFR 167

Query: 624 ELTCDLELIDLGFTGPKYTWCNNRIGKTNIKERLDHALANVDWFNIFPQAFLQHIPNAAS 445
               +   +DLGF G ++TW NNR G  NI+ERLD  +AN  W   FP +F+ H+P   S
Sbjct: 168 NAMEECHFMDLGFVGYEFTWTNNRGGDANIQERLDRFVANDLWKIKFPGSFVSHLPKRKS 227

Query: 444 DHLILSLNL----XXXXXXXXKRPFKFQEMWLRDASLPLRNVISNSW 316
           DH+ +  ++             + F+F+ MWLR+       V+  +W
Sbjct: 228 DHVPIVASVKGAQSAATRTKKSKRFRFEAMWLREGESD--EVVKETW 272



 Score = 52.4 bits (124), Expect(2) = 2e-27
 Identities = 26/90 (28%), Positives = 41/90 (45%)
 Frame = -3

Query: 275 LNSPKLQRDLAIWNTNTFGNVFLQMRKCERKLAEMNDFPPTPENTXXXXXXXXXXXXXXX 96
           +N  +    L  W+   FG+V  ++R C+ ++  + +  P+ +N                
Sbjct: 280 INLARTANKLLSWSKQKFGHVAKEIRMCQHQMKVLMESEPSEDNIMHMRALDARMDELEK 339

Query: 95  XXXEYWRQNSRNTKIKNGDRNT*FFHTYAS 6
               YW Q SR   IK+GD+NT FFH  AS
Sbjct: 340 REEVYWHQRSRQDWIKSGDKNTKFFHQKAS 369