BLASTX nr result

ID: Coptis25_contig00026441 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026441
         (655 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272192.1| PREDICTED: uncharacterized protein LOC100259...   116   4e-24
emb|CBI37626.3| unnamed protein product [Vitis vinifera]              106   4e-21
ref|XP_002329508.1| predicted protein [Populus trichocarpa] gi|2...   104   1e-20
ref|XP_002530079.1| conserved hypothetical protein [Ricinus comm...   102   8e-20
ref|XP_002298719.1| predicted protein [Populus trichocarpa] gi|2...    95   1e-17

>ref|XP_002272192.1| PREDICTED: uncharacterized protein LOC100259153 [Vitis vinifera]
          Length = 990

 Score =  116 bits (290), Expect = 4e-24
 Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 15/233 (6%)
 Frame = +2

Query: 2    NKVACGKSKSEILADCQKLVLETLKNQPAGFGMSCFKTMFLEKYGYALDYQKLGYPKLSG 181
            +K    +S+SEILA CQKLV E LK  P GF M  F+ +FLE+YGY+LD QKLGY +L+ 
Sbjct: 700  DKKMLDRSRSEILAHCQKLVDEILKEYPEGFNMGAFRKLFLERYGYSLDVQKLGYQRLAS 759

Query: 182  LLETIPGIAVEFNFVLSSEKSSKAVIPKSVWENDGXXXXXXXXXXXXXXXNDP------- 340
            LL+ +PG+ +E  +++ S  +SK  + +S   N                 +D        
Sbjct: 760  LLQIMPGVKIESTYIVPSWTASKGSLLESSDTNGQEDNVSGKVGNSDSELSDASRKEDDL 819

Query: 341  DSAWKELGPI---SKPKNCMRSENNAETKE---GKENLDFDDNSYLSDEFSDSDGESPVR 502
            DS W+ELGP+   +  +N M SE   + KE    + +LD++  S   D+FSDS+GE+ + 
Sbjct: 820  DSPWEELGPVADTNSNRNEMESELRRKKKEETVRQVHLDYEP-SPSDDDFSDSEGETSLS 878

Query: 503  DGLDGKRVTRKXXXXXXXXXXXXXWH--KDDNGKKSRXXXXXXXXXXCRNESK 655
             G D +   +              W+  K+DN ++             RN+ K
Sbjct: 879  TGTDRQERPKISKEDSSLLRILDSWYSSKEDNKRRDGVENADGMIDCSRNDLK 931


>emb|CBI37626.3| unnamed protein product [Vitis vinifera]
          Length = 871

 Score =  106 bits (264), Expect = 4e-21
 Identities = 60/173 (34%), Positives = 96/173 (55%), Gaps = 2/173 (1%)
 Frame = +2

Query: 2    NKVACGKSKSEILADCQKLVLETLKNQPAGFGMSCFKTMFLEKYGYALDYQKLGYPKLSG 181
            + +  G    EILA CQKLV E LK  P GF M  F+ +FLE+YGY+LD QKLGY +L+ 
Sbjct: 640  SSIFLGTQSHEILAHCQKLVDEILKEYPEGFNMGAFRKLFLERYGYSLDVQKLGYQRLAS 699

Query: 182  LLETIPGIAVEFNFVLSSEKSSKAVIPKSVWENDGXXXXXXXXXXXXXXXNDPDSAWKEL 361
            LL+ +PG+ +E  +++ S  +SK  + +S   N                 +D DS W+EL
Sbjct: 700  LLQIMPGVKIESTYIVPSWTASKGSLLESSDTN-----------GQEDNEDDLDSPWEEL 748

Query: 362  GPISKPKNCMRSENNAETKEGKENLDFDDNSYLS--DEFSDSDGESPVRDGLD 514
            GP++   +   + N  E+++ +  +  +D+S L   D +  S  ++  RDG++
Sbjct: 749  GPVADTNS---NRNEMESEQERPKISKEDSSLLRILDSWYSSKEDNKRRDGVE 798


>ref|XP_002329508.1| predicted protein [Populus trichocarpa] gi|222870188|gb|EEF07319.1|
            predicted protein [Populus trichocarpa]
          Length = 998

 Score =  104 bits (260), Expect = 1e-20
 Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
 Frame = +2

Query: 20   KSKSEILADCQKLVLETLKNQPAGFGMSCFKTMFLEKYGYALDYQKLGYPKLSGLLETIP 199
            +S+SEIL DCQKLV ETLK  P G+ M  F+ +FLE+YGY L+ +KLGYPKL+ LL+ +P
Sbjct: 743  RSRSEILGDCQKLVKETLKEFPGGYNMGSFRKLFLERYGYNLNAKKLGYPKLASLLQIMP 802

Query: 200  GIAVEFNFVL-SSEKSSKAVIPKSVWENDGXXXXXXXXXXXXXXXND--PDSAWKELGPI 370
            G+ +E N+++ S+E + ++ + ++V  N                  D   DS W+ELGP+
Sbjct: 803  GVEIESNYIIPSNEMAKRSSVGRTVLNNTYPRSASSDSELSDASKKDDESDSTWEELGPV 862

Query: 371  SKPKNCMRSENNAETKEG-KENLDFDDNSY----LSDEFSDSDGES 493
                    +  +    +G  E++      Y      DEF DS+ ES
Sbjct: 863  DNSIFGKEANESVSRMKGIGESVRQPSPDYEYPLSDDEFLDSEKES 908


>ref|XP_002530079.1| conserved hypothetical protein [Ricinus communis]
            gi|223530432|gb|EEF32319.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 952

 Score =  102 bits (253), Expect = 8e-20
 Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 1/193 (0%)
 Frame = +2

Query: 20   KSKSEILADCQKLVLETLKNQPAGFGMSCFKTMFLEKYGYALDYQKLGYPKLSGLLETIP 199
            +S+ +IL DCQKLV E LK  P G+ +S F+ +FLEKYGY L  QK GY KL+ LL+ +P
Sbjct: 657  RSRKKILVDCQKLVKEILKEFPEGYNISSFRKLFLEKYGYHLHVQKFGYQKLTSLLQIMP 716

Query: 200  GIAVEFNFVLSSEKSSKAVIPKSVWENDGXXXXXXXXXXXXXXXND-PDSAWKELGPISK 376
            G+ +E  +++ + K++K  I  S   N                 +D  DS W +LGP+  
Sbjct: 717  GVKIESTYIIPANKATKCSIQDSDVPNIQESNVSDTSKALGGELSDESDSGWDKLGPVDN 776

Query: 377  PKNCMRSENNAETKEGKENLDFDDNSYLSDEFSDSDGESPVRDGLDGKRVTRKXXXXXXX 556
                  S    E +E        + S   D+FSD +GES      +G+   R        
Sbjct: 777  -----SSSRRKEQEEQCLGSPHYEPSLSEDDFSDPEGESWTATQQEGQAKYRVNTEDSSL 831

Query: 557  XXXXXXWHKDDNG 595
                  W+   +G
Sbjct: 832  LQILDLWYSSSDG 844


>ref|XP_002298719.1| predicted protein [Populus trichocarpa] gi|222845977|gb|EEE83524.1|
            predicted protein [Populus trichocarpa]
          Length = 855

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 6/178 (3%)
 Frame = +2

Query: 20   KSKSEILADCQKLVLETLKNQPAGFGMSCFKTMFLEKYGYALDYQKLGYPKLSGLLETIP 199
            +S+SEIL DCQKLV E LK  P G+ M  F+ +FLE+YGY LD +KLGYPKL+  L+ +P
Sbjct: 676  RSRSEILGDCQKLVKEILKEFPGGYNMDAFRKLFLERYGYNLDAKKLGYPKLASFLQIMP 735

Query: 200  GIAVEFNFVL-SSEKSSKAVIPKSVWENDGXXXXXXXXXXXXXXXNDPDSAWKELGPISK 376
            G+ +E N ++  +E + ++   ++V +N                 ++ DS W+EL     
Sbjct: 736  GVKIESNLIIPCNEMAKRSSTGRAVLDNTS---SESELFDASKKDDELDSTWEEL----D 788

Query: 377  PKNCMRSENNAETKEGKENLD--FDDNSYL---SDEFSDSDGESPVRDGLDGKRVTRK 535
             +     E+   T+ G +      D+NS L    D + DS  E+     +DG  V+ K
Sbjct: 789  DEYSDSEESGVVTRPGGQAKPGFIDENSSLLQMLDSWDDSKEENKTEPLVDGILVSLK 846


Top