BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026402
         (1261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   221   3e-55
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   202   1e-49
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   201   4e-49
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   176   1e-41
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   175   3e-41

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  221 bits (563), Expect = 3e-55
 Identities = 112/228 (49%), Positives = 149/228 (65%)
 Frame = -3

Query: 686 NFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA*TSFFREAYI 507
           N  L  IP   EI++ VFS+ ++S+ GPDGF  CFY   W+I+++D+  A   FF   +I
Sbjct: 109 NHALTMIPSNDEIKQAVFSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWI 168

Query: 506 PMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISKLVSIEQAWF 327
               N N   LIPK  NA    Q+RPI M+NF  KI+SKI+  RL  I+  +VS EQ  F
Sbjct: 169 LPNFNANTLILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGF 228

Query: 326 IHGRSVHANICMASEMINAMKQKKSGGSVGLKIDISQAYDTLT*EFLLEVLKQLGFGQRW 147
           I GR++   +C+ASE IN + QK  GG++  K+DIS+A+DTL  +FLL+VLKQ GF + +
Sbjct: 229 IQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETF 288

Query: 146 INWVYTILGTTKLSVLIDGGPCGYMGVRRGLRQGDPLSPLLFALAEDV 3
            NW+  IL + KLS+ I+G   GY    RG+RQGDPLSPLLF LAEDV
Sbjct: 289 CNWIDAILQSAKLSICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDV 336


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  202 bits (514), Expect = 1e-49
 Identities = 97/244 (39%), Positives = 155/244 (63%)
 Frame = -3

Query: 734  NDQLLNLISKVITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIR 555
            ND +++ I  +++  DN  L  +PL  E++  VF++  + + GP+GF G FY   W+I+ 
Sbjct: 419  NDLVVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVG 478

Query: 554  DDLCSA*TSFFREAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTR 375
             D+  +   FF    +   +N+N   LIPK   A+    YRPI ++NF  KI+SKI+  R
Sbjct: 479  ADVIQSVQDFFISGQLAQNINSNLIVLIPKVPGARVMGDYRPIALANFQFKIISKILADR 538

Query: 374  LKTIISKLVSIEQAWFIHGRSVHANICMASEMINAMKQKKSGGSVGLKIDISQAYDTLT* 195
            L  I  +++S+EQ  FI  R +   + +ASE IN +++++ GG+V LK+DI++A+DTL  
Sbjct: 539  LADITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDW 598

Query: 194  EFLLEVLKQLGFGQRWINWVYTILGTTKLSVLIDGGPCGYMGVRRGLRQGDPLSPLLFAL 15
             FLL VL++ GF +++++W+  IL + +LSVL++G   G+     G+RQGDPLSPLLF L
Sbjct: 599  NFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGVRQGDPLSPLLFCL 658

Query: 14   AEDV 3
             E+V
Sbjct: 659  VEEV 662


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  201 bits (510), Expect = 4e-49
 Identities = 99/246 (40%), Positives = 150/246 (60%), Gaps = 2/246 (0%)
 Frame = -3

Query: 734 NDQLL--NLISKVITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNI 561
           +D LL    I K++    N +L  +P + E++  VF + S+ + GPD F  CF+   WNI
Sbjct: 152 HDHLLVEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNI 211

Query: 560 IRDDLCSA*TSFFREAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQ 381
           ++ D+  A   FF+  ++P   N N   LIPK  NA    QYR I + NF  KI++K++ 
Sbjct: 212 VKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLA 271

Query: 380 TRLKTIISKLVSIEQAWFIHGRSVHANICMASEMINAMKQKKSGGSVGLKIDISQAYDTL 201
            RL  I+  ++S EQ  F+ GR++   I + SE IN +  K  GG++ LKID+++A+DTL
Sbjct: 272 DRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTL 331

Query: 200 T*EFLLEVLKQLGFGQRWINWVYTILGTTKLSVLIDGGPCGYMGVRRGLRQGDPLSPLLF 21
             +FLL VLK  GF + + NW+ TIL ++K+ + ++G   G+    RG+RQGDPLSPLLF
Sbjct: 332 NWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLF 391

Query: 20  ALAEDV 3
            + E+V
Sbjct: 392 CIVEEV 397


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1229

 Score =  176 bits (446), Expect = 1e-41
 Identities = 92/239 (38%), Positives = 142/239 (59%), Gaps = 2/239 (0%)
 Frame = -3

Query: 713  ISKVITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA* 534
            I  ++++ DN  L  IP + E++  VFS+ +  + GPDGF   FYH+ W+II  D+    
Sbjct: 307  IEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREI 366

Query: 533  TSFFREAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISK 354
              FF     P  +N     LIPK++  +K + YRPI + N F KI++KIM  R++ I+ K
Sbjct: 367  RLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPK 426

Query: 353  LVSIEQAWFIHGRSVHANICMASEMINAMK--QKKSGGSVGLKIDISQAYDTLT*EFLLE 180
            L+S  Q+ F+ GR +  N+ +  E+++ ++    K   S+ +K D+S+AYD +  +FL +
Sbjct: 427  LISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKK 486

Query: 179  VLKQLGFGQRWINWVYTILGTTKLSVLIDGGPCGYMGVRRGLRQGDPLSPLLFALAEDV 3
            VL++ GF   WI+WV   + +   S LI+G P G +   RGLRQGDPLSP LF L  +V
Sbjct: 487  VLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEV 545


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  175 bits (443), Expect = 3e-41
 Identities = 93/254 (36%), Positives = 149/254 (58%), Gaps = 4/254 (1%)
 Frame = -3

Query: 752  FRSTQVND--QLLNLISKVITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFY 579
            F +TQ +D  ++++ I+  +TE+ N  L     + E++  VF++ ++ + G DGF   FY
Sbjct: 759  FTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFY 818

Query: 578  HACWNIIRDDLCSA*TSFFREAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKI 399
            H  W++I +D+C     FF    +   +N     LIPK I+ K  S YRPI +     KI
Sbjct: 819  HHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKI 878

Query: 398  LSKIMQTRLKTIISKLVSIEQAWFIHGRSVHANICMASEMINAMKQKK--SGGSVGLKID 225
            +SKI+  RLK  +  ++S  QA F+ G+++  N+ +A E+++++K ++    G V +K D
Sbjct: 879  ISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTD 938

Query: 224  ISQAYDTLT*EFLLEVLKQLGFGQRWINWVYTILGTTKLSVLIDGGPCGYMGVRRGLRQG 45
            IS+AYD +   FL +V+ QLGF  RW+ W+ T + +    VLI+G P G +   RG+RQG
Sbjct: 939  ISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQG 998

Query: 44   DPLSPLLFALAEDV 3
            DPLSP LF    +V
Sbjct: 999  DPLSPYLFLFCAEV 1012