BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026389
         (479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264382.1| PREDICTED: DNA damage response protein WSS1 ...   126   2e-27
ref|XP_002522770.1| conserved hypothetical protein [Ricinus comm...   120   1e-25
gb|AAF79318.1|AC002304_11 F14J16.17 [Arabidopsis thaliana]            114   6e-24
ref|NP_564704.2| zinc ion binding protein [Arabidopsis thaliana]...   114   6e-24
ref|XP_002891861.1| zinc ion binding protein [Arabidopsis lyrata...   110   2e-22

>ref|XP_002264382.1| PREDICTED: DNA damage response protein WSS1 [Vitis vinifera]
           gi|296089891|emb|CBI39710.3| unnamed protein product
           [Vitis vinifera]
          Length = 366

 Score =  126 bits (316), Expect = 2e-27
 Identities = 69/159 (43%), Positives = 81/159 (50%)
 Frame = -2

Query: 478 WCGSQASPIIIEDESSTDVSQAFTAXXXXXXXXXXXXXXXXXXLDEVPSKKSRLAGNFAG 299
           WCGSQ+       ESS+D+S                       LD    K+S   G    
Sbjct: 207 WCGSQSCEASEGGESSSDLSDRHVHREQSAGMSSHGSGRGALDLDVTSRKRSHETG---- 262

Query: 298 RNTSNVGPKSGVVENSVPASTSSSISDHWTTTDGIEEKSFWECEICTLFNPSLAPICEAC 119
                    S  V+ S  AS S S+  H   T   EE   WEC ICTL NP LAPIC+ C
Sbjct: 263 ---------SSFVDLSKCASASGSVLGH-NATHNTEESIMWECGICTLLNPPLAPICKVC 312

Query: 118 CIERPKDVATKFKIWSCKHCTLENSVKLDKCTACGQWRY 2
             E+PKDV  K+K+WSCK CTLEN+V+LDKC ACGQWRY
Sbjct: 313 STEKPKDVGIKYKVWSCKFCTLENNVELDKCGACGQWRY 351


>ref|XP_002522770.1| conserved hypothetical protein [Ricinus communis]
           gi|223538008|gb|EEF39621.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 404

 Score =  120 bits (301), Expect = 1e-25
 Identities = 68/193 (35%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
 Frame = -2

Query: 478 WCGSQASPIIIEDESSTDVSQAFTAXXXXXXXXXXXXXXXXXXLDEVPSKKSRLAGNFAG 299
           WCGSQ++ +  + E+STD+++                        +   K+SR   N   
Sbjct: 207 WCGSQSAEVSEDGENSTDIAEDLV----------DARQTARSSRPDNGRKRSRELSNTTD 256

Query: 298 RNTSNVGPKSGVVENSVPASTSSSISDHWTTTD--------------------------- 200
             + N   +S +V+ S   STS SI D  T                              
Sbjct: 257 SQSFNGHLESNIVDLSTDVSTSGSIRDRGTNPKKRTWNLYKSASSDSAFINLIGGSSLGS 316

Query: 199 -------GIEEKSFWECEICTLFNPSLAPICEACCIERPKDVATKFKIWSCKHCTLENSV 41
                    EE + WEC  CTL NP LAPIC  C  E+PKD + K+KIWSCK CTLENSV
Sbjct: 317 IANHEIHSSEELAMWECAACTLLNPPLAPICNLCSTEKPKDASAKYKIWSCKFCTLENSV 376

Query: 40  KLDKCTACGQWRY 2
           KLDKC+AC +WRY
Sbjct: 377 KLDKCSACSEWRY 389


>gb|AAF79318.1|AC002304_11 F14J16.17 [Arabidopsis thaliana]
          Length = 450

 Score =  114 bits (286), Expect = 6e-24
 Identities = 53/111 (47%), Positives = 72/111 (64%)
 Frame = -2

Query: 334 SKKSRLAGNFAGRNTSNVGPKSGVVENSVPASTSSSISDHWTTTDGIEEKSFWECEICTL 155
           +K++R  G+  G + +   P +GV+++S+P  ++S     +      EE + WEC  CTL
Sbjct: 331 TKRNRSPGD-QGPSCAKDVPNAGVMKSSIPLPSTS-----YNANQSREESTMWECAECTL 384

Query: 154 FNPSLAPICEACCIERPKDVATKFKIWSCKHCTLENSVKLDKCTACGQWRY 2
            NPSLAPICE C   +PK+   K K+WSCK CTLEN VKL+KC ACGQWRY
Sbjct: 385 LNPSLAPICELCTAAKPKEREMKHKVWSCKFCTLENEVKLEKCEACGQWRY 435


>ref|NP_564704.2| zinc ion binding protein [Arabidopsis thaliana]
           gi|110738098|dbj|BAF00982.1| hypothetical protein
           [Arabidopsis thaliana] gi|119935912|gb|ABM06032.1|
           At1g55915 [Arabidopsis thaliana]
           gi|332195198|gb|AEE33319.1| zinc ion binding protein
           [Arabidopsis thaliana]
          Length = 404

 Score =  114 bits (286), Expect = 6e-24
 Identities = 53/111 (47%), Positives = 72/111 (64%)
 Frame = -2

Query: 334 SKKSRLAGNFAGRNTSNVGPKSGVVENSVPASTSSSISDHWTTTDGIEEKSFWECEICTL 155
           +K++R  G+  G + +   P +GV+++S+P  ++S     +      EE + WEC  CTL
Sbjct: 285 TKRNRSPGD-QGPSCAKDVPNAGVMKSSIPLPSTS-----YNANQSREESTMWECAECTL 338

Query: 154 FNPSLAPICEACCIERPKDVATKFKIWSCKHCTLENSVKLDKCTACGQWRY 2
            NPSLAPICE C   +PK+   K K+WSCK CTLEN VKL+KC ACGQWRY
Sbjct: 339 LNPSLAPICELCTAAKPKEREMKHKVWSCKFCTLENEVKLEKCEACGQWRY 389


>ref|XP_002891861.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297337703|gb|EFH68120.1| zinc ion binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 401

 Score =  110 bits (274), Expect = 2e-22
 Identities = 67/180 (37%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
 Frame = -2

Query: 478 WCGSQASPIIIEDESSTDVSQ---AFTAXXXXXXXXXXXXXXXXXXLDEVPSKKSRLAGN 308
           WCGSQ++  + ++ES +D  +   +                      +  P   S   G+
Sbjct: 208 WCGSQSTEALEDEESDSDTCKEPVSIRETCMSMNAKSVKRCNSLSNANSCPPSSSLQGGS 267

Query: 307 -------------FAGRNTSNVGPKSGVVENSVPAS--TSSSI---SDHWTTTDGIEEKS 182
                         A RN S  G +       VP S  T SSI   S  +      EE +
Sbjct: 268 DVIDLTEESFEPRCAKRNCSP-GDQGPSCAKDVPNSGFTKSSITLPSTSYNANQSREEST 326

Query: 181 FWECEICTLFNPSLAPICEACCIERPKDVATKFKIWSCKHCTLENSVKLDKCTACGQWRY 2
            WEC  CTL NPSLAPICE C   +PK+   K K+WSCK CTLEN VKL+KC ACGQWRY
Sbjct: 327 MWECAECTLLNPSLAPICELCTATKPKEKEMKHKVWSCKFCTLENEVKLEKCEACGQWRY 386