BLASTX nr result
ID: Coptis25_contig00026384
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00026384
(596 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI35182.3| unnamed protein product [Vitis vinifera] 88 6e-19
ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [... 88 6e-19
emb|CAN67081.1| hypothetical protein VITISV_007074 [Vitis vinifera] 87 2e-18
ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus ... 84 6e-17
ref|XP_002319087.1| predicted protein [Populus trichocarpa] gi|2... 82 2e-16
>emb|CBI35182.3| unnamed protein product [Vitis vinifera]
Length = 511
Score = 88.2 bits (217), Expect(2) = 6e-19
Identities = 60/147 (40%), Positives = 72/147 (48%), Gaps = 22/147 (14%)
Frame = -2
Query: 499 QMQMLNSRLENLPPHL-LGLPQGFPLNAGAGPGFGV---------------------PPT 386
QMQM N +E++PPH G PQG P NA GPGFG PP
Sbjct: 295 QMQMSNPPIEHMPPHQPWGPPQGLPPNASGGPGFGPNPPYMPPPRQLDSYYPPPELPPPV 354
Query: 385 GKQPHQGLFMYGRESPMGLHSTVNVQPPPALNKQKMDISYLGQTKGGIPLLQLCRKSHNI 206
KQPHQG+ YGRE PMG H+ + QP P++ Q + IPL
Sbjct: 355 EKQPHQGISAYGREVPMGGHAPSSAQPAPSMITQVTQ-------QMQIPL---------- 397
Query: 205 CKTFLYDEAVIGTSGANISYPRWASGA 125
Y +AVIGT+GA+ISY R ASGA
Sbjct: 398 ----SYADAVIGTAGASISYIRRASGA 420
Score = 31.2 bits (69), Expect(2) = 6e-19
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -1
Query: 119 ITVRETKGVPG*MMVQING 63
+T++ET+GVPG M V+ING
Sbjct: 422 VTIQETRGVPGEMTVEING 440
>ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 442
Score = 88.2 bits (217), Expect(2) = 6e-19
Identities = 60/147 (40%), Positives = 72/147 (48%), Gaps = 22/147 (14%)
Frame = -2
Query: 499 QMQMLNSRLENLPPHL-LGLPQGFPLNAGAGPGFGV---------------------PPT 386
QMQM N +E++PPH G PQG P NA GPGFG PP
Sbjct: 226 QMQMSNPPIEHMPPHQPWGPPQGLPPNASGGPGFGPNPPYMPPPRQLDSYYPPPELPPPV 285
Query: 385 GKQPHQGLFMYGRESPMGLHSTVNVQPPPALNKQKMDISYLGQTKGGIPLLQLCRKSHNI 206
KQPHQG+ YGRE PMG H+ + QP P++ Q + IPL
Sbjct: 286 EKQPHQGISAYGREVPMGGHAPSSAQPAPSMITQVTQ-------QMQIPL---------- 328
Query: 205 CKTFLYDEAVIGTSGANISYPRWASGA 125
Y +AVIGT+GA+ISY R ASGA
Sbjct: 329 ----SYADAVIGTAGASISYIRRASGA 351
Score = 31.2 bits (69), Expect(2) = 6e-19
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -1
Query: 119 ITVRETKGVPG*MMVQING 63
+T++ET+GVPG M V+ING
Sbjct: 353 VTIQETRGVPGEMTVEING 371
>emb|CAN67081.1| hypothetical protein VITISV_007074 [Vitis vinifera]
Length = 534
Score = 86.7 bits (213), Expect(2) = 2e-18
Identities = 60/147 (40%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Frame = -2
Query: 499 QMQMLNSRLENLPPHL-LGLPQGFPLNAGAGPGFGV---------------------PPT 386
QMQM N +E+ PPH G PQG P NA GPGFG PP
Sbjct: 306 QMQMSNPPIEHRPPHQPWGPPQGLPPNASGGPGFGPNPPYMPPPRQLDSYYPPPELPPPV 365
Query: 385 GKQPHQGLFMYGRESPMGLHSTVNVQPPPALNKQKMDISYLGQTKGGIPLLQLCRKSHNI 206
KQPHQG+ YGRE PMG H+ + QP P++ Q + IPL
Sbjct: 366 EKQPHQGISAYGREVPMGGHAPSSAQPAPSMITQVTQ-------QMQIPL---------- 408
Query: 205 CKTFLYDEAVIGTSGANISYPRWASGA 125
Y +AVIGT+GA+ISY R ASGA
Sbjct: 409 ----SYADAVIGTAGASISYIRRASGA 431
Score = 31.2 bits (69), Expect(2) = 2e-18
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -1
Query: 119 ITVRETKGVPG*MMVQING 63
+T++ET+GVPG M V+ING
Sbjct: 433 VTIQETRGVPGEMTVEING 451
>ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein,
putative [Ricinus communis]
Length = 548
Score = 83.6 bits (205), Expect(2) = 6e-17
Identities = 59/146 (40%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Frame = -2
Query: 496 MQMLNS-RLENLPPHLL-GLPQGFPLNAGAGPGFG--------------------VPPTG 383
MQM N +E++PPH G PQG P NAG GPG+G PP
Sbjct: 333 MQMQNPPHMEHMPPHQSWGPPQGIPPNAGGGPGYGNPQYMPPPRQIENYYPPADLPPPME 392
Query: 382 KQPHQGLFMYGRESPMGLHSTVNVQPPPALNKQKMDISYLGQTKGGIPLLQLCRKSHNIC 203
KQPHQG+ YGRE+PMG+H + N Q P++ I+ + Q + IPL
Sbjct: 393 KQPHQGISAYGREAPMGVHGSSNSQAAPSM------ITQITQ-QMQIPL----------- 434
Query: 202 KTFLYDEAVIGTSGANISYPRWASGA 125
Y +AVIGT+G +ISY R ASGA
Sbjct: 435 ---SYADAVIGTAGTSISYIRRASGA 457
Score = 29.3 bits (64), Expect(2) = 6e-17
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = -1
Query: 119 ITVRETKGVPG*MMVQING 63
+T++ET+GVPG M V+I+G
Sbjct: 459 VTIQETRGVPGEMTVEISG 477
>ref|XP_002319087.1| predicted protein [Populus trichocarpa] gi|222857463|gb|EEE95010.1|
predicted protein [Populus trichocarpa]
Length = 392
Score = 82.0 bits (201), Expect(2) = 2e-16
Identities = 59/147 (40%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Frame = -2
Query: 499 QMQMLNSRLENLPPHLL-GLPQGFPLNAGAGPGFG--------------------VPPT- 386
QMQM N +E +PPH G PQ P N G GPG+G +PP
Sbjct: 177 QMQMSNPSMEQMPPHQSWGPPQPLPPNHGGGPGYGQNPQYMPPPRQLDNYYPPADMPPLM 236
Query: 385 GKQPHQGLFMYGRESPMGLHSTVNVQPPPALNKQKMDISYLGQTKGGIPLLQLCRKSHNI 206
KQPHQG+ YGRE+PMG H++ N Q P++ I+ + Q + IPL
Sbjct: 237 EKQPHQGISAYGREAPMGSHASSNAQAAPSM------ITQITQ-QMQIPL---------- 279
Query: 205 CKTFLYDEAVIGTSGANISYPRWASGA 125
Y +AVIGT+GA+ISY R ASGA
Sbjct: 280 ----SYADAVIGTAGASISYIRRASGA 302
Score = 29.3 bits (64), Expect(2) = 2e-16
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = -1
Query: 119 ITVRETKGVPG*MMVQING 63
+T++ET+GVPG M V+I+G
Sbjct: 304 VTIQETRGVPGAMTVEISG 322