BLASTX nr result
ID: Coptis25_contig00026376
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00026376
(1040 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containi... 454 e-125
ref|XP_002523825.1| pentatricopeptide repeat-containing protein,... 454 e-125
emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera] 452 e-125
ref|XP_003603831.1| Pentatricopeptide repeat-containing protein ... 446 e-123
ref|XP_002336862.1| predicted protein [Populus trichocarpa] gi|2... 439 e-121
>ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 454 bits (1169), Expect = e-125
Identities = 224/312 (71%), Positives = 251/312 (80%)
Frame = +2
Query: 101 EDENDTNNTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFSKTT 280
E N N LS ETL+ EKFH+LIK H R I +LS DFS+ +
Sbjct: 43 ESGNSAVNIVLSSEETLVVEKFHSLIKSHQRKNTNPDPISPNPHYT--IASLSFDFSQIS 100
Query: 281 TINSITPQIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAGKVR 460
+ +S++ IV+ VIEKCG +RHGIPF Q L+FFNW TN +F H P+PY EMIDLAGKVR
Sbjct: 101 SADSVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVR 160
Query: 461 HFDIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFS 640
FD+AW IDLMKTRNV+IPVETF+ILVRRYV+AGL AE VHAFNRMEDYGCKPDKIAFS
Sbjct: 161 QFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFS 220
Query: 641 IVISILCKKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVG 820
+VIS L KKRRA EAQSFFD LKD+FEPDV++YTSLV+GWCRAGNI +AERVF EMK G
Sbjct: 221 VVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAG 280
Query: 821 IQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVL 1000
IQPNVYTYSIVIDALCR GQI+RAHDVF+EMIDVGC PN+ITFNNLMRVHVKAGRTEKVL
Sbjct: 281 IQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVL 340
Query: 1001 QVYNQMKRLDCP 1036
QVYNQMKRL CP
Sbjct: 341 QVYNQMKRLGCP 352
Score = 71.2 bits (173), Expect = 4e-10
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 36/200 (18%)
Frame = +2
Query: 527 TFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIVISILCKKRRAEEAQSFFDGL 706
TF+ L+R +V+AG + + +N+M+ GC PD I ++ +I C+ EEA + +
Sbjct: 322 TFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSV 381
Query: 707 KD-----------------------------------KFEPDVIIYTSLVNGWCRAGNID 781
K K P+ + Y L+ + + D
Sbjct: 382 KKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTD 441
Query: 782 QAERVFREMKEVGIQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGC-SPNSITFNNL 958
++ +EM E I+PN TY ++I C G + A+ F EMI+ C P+ + +
Sbjct: 442 MVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMV 501
Query: 959 MRVHVKAGRTEKVLQVYNQM 1018
++ KAG+ +K ++ +M
Sbjct: 502 LQQLRKAGQLKKHEELVEKM 521
>ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536913|gb|EEF38551.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 528
Score = 454 bits (1167), Expect = e-125
Identities = 222/310 (71%), Positives = 250/310 (80%)
Frame = +2
Query: 107 ENDTNNTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFSKTTTI 286
E D N LS ET LA KFH+LIKDHHR +LSLDFS +T
Sbjct: 46 EEDYINPSLSFEETTLANKFHSLIKDHHRRNPNFSLPNTPSH------SLSLDFSHFST- 98
Query: 287 NSITPQIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAGKVRHF 466
+ ++P +V HVIEKC ++RHGIPF QALSFFNW T++ F H P+PYNEMIDLAGKVR+F
Sbjct: 99 SPVSPSLVSHVIEKCAAVRHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNF 158
Query: 467 DIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIV 646
D+ W IDLMK RNV+I +ETFSIL+RRYVRAGL +E VHAFNRMEDY CKPDKIAFSI+
Sbjct: 159 DLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSIL 218
Query: 647 ISILCKKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQ 826
ISILC+KRRA EAQSFFD LKDKFEPDVI+YT+LV GWCRAGNI +AERVF EMK G
Sbjct: 219 ISILCRKRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCM 278
Query: 827 PNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQV 1006
PNVYTY+IVIDALCRCGQI+RAHDVFAEM+DVGC PNSITFNNL+RVHVKAGRTEKVLQV
Sbjct: 279 PNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQV 338
Query: 1007 YNQMKRLDCP 1036
YNQMKR+ CP
Sbjct: 339 YNQMKRMGCP 348
Score = 99.8 bits (247), Expect = 1e-18
Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 1/180 (0%)
Frame = +2
Query: 494 MKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIVISILCKKRR 673
MK V T++I++ R G + F M D GC+P+ I F+ ++ + K R
Sbjct: 272 MKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGR 331
Query: 674 AEEAQSFFDGLKDK-FEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSI 850
E+ ++ +K PD + Y L+ C+ GN+D+A +V M + G PN T++
Sbjct: 332 TEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNG 391
Query: 851 VIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLD 1030
+ ++ + ++ AH ++A+M ++ C N++T+N LMR+ V T+ VL++ +M D
Sbjct: 392 LFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDD 451
Score = 68.2 bits (165), Expect = 3e-09
Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 2/192 (1%)
Frame = +2
Query: 425 YNEMIDLAGKVRHFDIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRME 604
+N ++ + K + + MK T++ L+ + + G + E + N M
Sbjct: 319 FNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMV 378
Query: 605 DYGCKPDKIAFSIVISILCKKRRAEEAQSFFDGLKD-KFEPDVIIYTSLVNGWCRAGNID 781
GC P+ F+ + + K R A + +K+ K + + + Y L+ + + D
Sbjct: 379 KKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTD 438
Query: 782 QAERVFREMKEVGIQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGC-SPNSITFNNL 958
++ +EM E ++PNV TY ++I C G + A+ F EM++ C P+ + +
Sbjct: 439 MVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKV 498
Query: 959 MRVHVKAGRTEK 994
++ KAG+ +K
Sbjct: 499 LQQLRKAGQLKK 510
Score = 57.0 bits (136), Expect = 7e-06
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 5/185 (2%)
Frame = +2
Query: 386 VTNQTQFHHCPQP---YNEMIDLAGKVRHFDIAWYFIDLMKTRNVQIPVETFSILVRRYV 556
V NQ + CP YN +I+ K + D A ++ M + TF+ L
Sbjct: 338 VYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIA 397
Query: 557 RAGLVAEGVHAFNRMEDYGCKPDKIAFSIVISILCKKRRAEEAQSFFDGL-KDKFEPDVI 733
+ V + +M++ CK + + ++I++ + + + + +D EP+V
Sbjct: 398 KLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVN 457
Query: 734 IYTSLVNGWCRAGNIDQAERVFREM-KEVGIQPNVYTYSIVIDALCRCGQISRAHDVFAE 910
Y L+ +C G+ + A + FREM +E ++P++ Y V+ L + GQ+ + ++ A
Sbjct: 458 TYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAV 517
Query: 911 MIDVG 925
M+D G
Sbjct: 518 MVDRG 522
>emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 452 bits (1163), Expect = e-125
Identities = 223/312 (71%), Positives = 250/312 (80%)
Frame = +2
Query: 101 EDENDTNNTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFSKTT 280
E N N LS ETL+ EKFH+LIK H R I +LS DFS+ +
Sbjct: 1075 ESGNSAVNIVLSSEETLVVEKFHSLIKSHQRKNTNPDPISPNPHYT--IASLSFDFSQIS 1132
Query: 281 TINSITPQIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAGKVR 460
+ +S++ IV+ VIEKCG +RHGIPF Q L+FFNW TN +F H P+PY EMIDLAGKVR
Sbjct: 1133 SADSVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVR 1192
Query: 461 HFDIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFS 640
FD+AW IDLMKTRNV+IPVETF+ILVRRYV+AGL AE VHAFNRMEDYGCKPDKIAFS
Sbjct: 1193 QFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFS 1252
Query: 641 IVISILCKKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVG 820
+VIS L KKRRA EAQSFFD LKD+FEPDV++YTSLV+GWCRAGNI +AERVF EMK G
Sbjct: 1253 VVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAG 1312
Query: 821 IQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVL 1000
I PNVYTYSIVIDALCR GQI+RAHDVF+EMIDVGC PN+ITFNNLMRVHVKAGRTEKVL
Sbjct: 1313 IXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVL 1372
Query: 1001 QVYNQMKRLDCP 1036
QVYNQMKRL CP
Sbjct: 1373 QVYNQMKRLGCP 1384
Score = 71.2 bits (173), Expect = 4e-10
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 36/200 (18%)
Frame = +2
Query: 527 TFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIVISILCKKRRAEEAQSFFDGL 706
TF+ L+R +V+AG + + +N+M+ GC PD I ++ +I C+ EEA + +
Sbjct: 1354 TFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSV 1413
Query: 707 KD-----------------------------------KFEPDVIIYTSLVNGWCRAGNID 781
K K P+ + Y L+ + + D
Sbjct: 1414 KKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTD 1473
Query: 782 QAERVFREMKEVGIQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGC-SPNSITFNNL 958
++ +EM E I+PN TY ++I C G + A+ F EMI+ C P+ + +
Sbjct: 1474 MVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMV 1533
Query: 959 MRVHVKAGRTEKVLQVYNQM 1018
++ KAG+ +K ++ +M
Sbjct: 1534 LQQLRKAGQLKKHEELVEKM 1553
>ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 530
Score = 446 bits (1146), Expect = e-123
Identities = 213/316 (67%), Positives = 252/316 (79%), Gaps = 4/316 (1%)
Frame = +2
Query: 104 DENDTN----NTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLSLDFS 271
D ND N NT LSP +T + +KFHT+IKDH+R I LS++FS
Sbjct: 37 DTNDNNTTPQNTNLSPEDTHIVDKFHTIIKDHYRKNPNPNAVSPSLNLS--IPDLSIEFS 94
Query: 272 KTTTINSITPQIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEMIDLAG 451
K +T+ S++P I + IEKC +RHGIPF+Q+L+FFNW T F P+PYNEMIDLAG
Sbjct: 95 KISTVYSVSPSITRRAIEKCSGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAG 154
Query: 452 KVRHFDIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKI 631
K+RHFD+AW+ IDLMK+R V+I V TFS+LVRRYVRAGL AE VHAFNRMEDYGCKPDK+
Sbjct: 155 KLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKV 214
Query: 632 AFSIVISILCKKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERVFREMK 811
+FSIVIS LCKKRRA EA+ FFD LK KFEPDVI+YTSLV+GWCRAG+I +AE VF +MK
Sbjct: 215 SFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMK 274
Query: 812 EVGIQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTE 991
E G++PNVYTYSIVID+LCRCGQI+RAHDVF+EMID GC PN++TFN+LMRVHVKAGRTE
Sbjct: 275 EAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTE 334
Query: 992 KVLQVYNQMKRLDCPA 1039
KVLQVYNQMKRL C A
Sbjct: 335 KVLQVYNQMKRLGCAA 350
Score = 94.7 bits (234), Expect = 3e-17
Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Frame = +2
Query: 494 MKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIVISILCKKRR 673
MK V+ V T+SI++ R G + F+ M D GC P+ + F+ ++ + K R
Sbjct: 273 MKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGR 332
Query: 674 AEEAQSFFDGLKDK-FEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSI 850
E+ ++ +K D I Y L+ C+ N+D+A +V M + G+ PN T++
Sbjct: 333 TEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNS 392
Query: 851 VIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQM 1018
+ + ++ AH ++A+M ++ C PN++T+N LMR+ + + VL++ +M
Sbjct: 393 IFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEM 448
Score = 69.7 bits (169), Expect = 1e-09
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Frame = +2
Query: 527 TFSILVRRYVRAGLVAEGVHAFNRMEDYGCKPDKIAFSIVISILCKKRRAEEAQSFFDGL 706
TF+ L+R +V+AG + + +N+M+ GC D I+++ +I CK +EA D +
Sbjct: 319 TFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTM 378
Query: 707 KDK-FEPDVIIYTSLVNGWCRAGNIDQAERVFREMKEVGIQPNVYTYSIVIDALCRCGQI 883
K P+ + S+ +++ A R++ +MKE+ PN TY+I++ I
Sbjct: 379 VKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSI 438
Query: 884 SRAHDVFAEMIDVGCSPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRL 1027
+ EM + PN T+ L+ + + G YN MK +
Sbjct: 439 DMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWN---NAYNLMKEM 483
>ref|XP_002336862.1| predicted protein [Populus trichocarpa] gi|222837029|gb|EEE75408.1|
predicted protein [Populus trichocarpa]
Length = 370
Score = 439 bits (1129), Expect = e-121
Identities = 216/319 (67%), Positives = 253/319 (79%), Gaps = 8/319 (2%)
Frame = +2
Query: 101 EDEND-------TNNTKLSPTETLLAEKFHTLIKDHHRXXXXXXXXXXXXXXXXXITTLS 259
+D ND T T LSP ET +AEK H+LIKDH+R I +LS
Sbjct: 37 DDSNDDEEHTIKTPKTPLSPEETFVAEKLHSLIKDHYRNNPNKTLPPDPTYT---IPSLS 93
Query: 260 LDFSKT-TTINSITPQIVKHVIEKCGSIRHGIPFIQALSFFNWVTNQTQFHHCPQPYNEM 436
LDFS+T +T++SI+P I++HVIE+ G +RHGIP Q L+FFNW + Q F P+ +NEM
Sbjct: 94 LDFSQTISTVHSISPSIIRHVIEQSGGVRHGIPVPQVLAFFNWASYQDGFDKSPEAFNEM 153
Query: 437 IDLAGKVRHFDIAWYFIDLMKTRNVQIPVETFSILVRRYVRAGLVAEGVHAFNRMEDYGC 616
+D AGKVR FD+AW+ IDLMK R+V+I VETFSIL+RRYVRAGL AE +HAFNRMEDY C
Sbjct: 154 VDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNC 213
Query: 617 KPDKIAFSIVISILCKKRRAEEAQSFFDGLKDKFEPDVIIYTSLVNGWCRAGNIDQAERV 796
KPDKIAFSI+ISILC+KRRA EAQ FFD LKDKFEPDVI+YT+LV GWCRAGNI +AERV
Sbjct: 214 KPDKIAFSILISILCRKRRASEAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERV 273
Query: 797 FREMKEVGIQPNVYTYSIVIDALCRCGQISRAHDVFAEMIDVGCSPNSITFNNLMRVHVK 976
F EMK GI+PNVYTYSIVID+LCRCGQI+RAHDVFAEM+D GC PNSIT+N+LMR+HVK
Sbjct: 274 FGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVK 333
Query: 977 AGRTEKVLQVYNQMKRLDC 1033
AGRTEKVLQVYNQMKRL C
Sbjct: 334 AGRTEKVLQVYNQMKRLGC 352