BLASTX nr result

ID: Coptis25_contig00026356 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026356
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274761.2| PREDICTED: uncharacterized protein LOC100264...    62   4e-08
emb|CBI25048.3| unnamed protein product [Vitis vinifera]               62   4e-08
emb|CAN62237.1| hypothetical protein VITISV_014688 [Vitis vinifera]    60   1e-07
ref|XP_002306799.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002520949.1| conserved hypothetical protein [Ricinus comm...    59   5e-07

>ref|XP_002274761.2| PREDICTED: uncharacterized protein LOC100264735 [Vitis vinifera]
          Length = 3544

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
 Frame = +3

Query: 6    PPNYSVHDKGEEKLSSSRKSLNKTLDGV--AGLKSEGVDLDQMSKVTRSSNELNFSDTNG 179
            P NY   +  E ++++S++  +K++     A  + +G  +DQ+S  T  SNE +FS+  G
Sbjct: 1945 PLNYIAGETSEVRITASQQESSKSMQEYVQAVQRLDGETVDQVS-ATSCSNEFSFSNNKG 2003

Query: 180  VLDGVHAKESFSYASLTVPSSPMISEKYIRKVPLTP 287
              D +H  +S S ASL +P SP++SEK   ++PLTP
Sbjct: 2004 TPDPIHLTDSQSSASLLIPDSPILSEKSGSRIPLTP 2039


>emb|CBI25048.3| unnamed protein product [Vitis vinifera]
          Length = 3220

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
 Frame = +3

Query: 6    PPNYSVHDKGEEKLSSSRKSLNKTLDGV--AGLKSEGVDLDQMSKVTRSSNELNFSDTNG 179
            P NY   +  E ++++S++  +K++     A  + +G  +DQ+S  T  SNE +FS+  G
Sbjct: 1820 PLNYIAGETSEVRITASQQESSKSMQEYVQAVQRLDGETVDQVS-ATSCSNEFSFSNNKG 1878

Query: 180  VLDGVHAKESFSYASLTVPSSPMISEKYIRKVPLTP 287
              D +H  +S S ASL +P SP++SEK   ++PLTP
Sbjct: 1879 TPDPIHLTDSQSSASLLIPDSPILSEKSGSRIPLTP 1914


>emb|CAN62237.1| hypothetical protein VITISV_014688 [Vitis vinifera]
          Length = 3508

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
 Frame = +3

Query: 6    PPNYSVHDKGEEKLSS----SRKSLNKTLDGVAGLKSEGVDLDQMSKVTRSSNELNFSDT 173
            P NY   +  E ++++    S KS+ + +  V  L  E VD  Q+S  T  SNE +FS+ 
Sbjct: 1923 PLNYIAGETSEVRITAFQQESSKSMQEYVQAVQRLDGETVD--QVS-ATSCSNEFSFSNN 1979

Query: 174  NGVLDGVHAKESFSYASLTVPSSPMISEKYIRKVPLTP 287
             G  D +H  +S S ASL +P SP++SEK   ++PLTP
Sbjct: 1980 KGTPDPIHLTDSQSSASLLIPDSPILSEKSGSRIPLTP 2017


>ref|XP_002306799.1| predicted protein [Populus trichocarpa] gi|222856248|gb|EEE93795.1|
           predicted protein [Populus trichocarpa]
          Length = 1314

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/86 (37%), Positives = 48/86 (55%)
 Frame = +3

Query: 30  KGEEKLSSSRKSLNKTLDGVAGLKSEGVDLDQMSKVTRSSNELNFSDTNGVLDGVHAKES 209
           K E  +S+S + L K+  GV  +++   D    +    SSNE N  + +G +D     +S
Sbjct: 417 KAEIAISNSHEELKKSAQGVPAVQNFVGDNVVQNSAISSSNEFNIRNVDGNMDSFRQADS 476

Query: 210 FSYASLTVPSSPMISEKYIRKVPLTP 287
            S ASL +P SP+ISEK   ++PLTP
Sbjct: 477 LSSASLNIPDSPIISEKSSTRIPLTP 502


>ref|XP_002520949.1| conserved hypothetical protein [Ricinus communis]
            gi|223539786|gb|EEF41366.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 3591

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
 Frame = +3

Query: 12   NYSVHDKGEEKLSSSRKSLNKTLDGVAGLKS-EGVDLDQMSKV--TRSSNELNFSDTNGV 182
            NY   DK E K+    + L +++ G  G++S +  D D + KV  T SSNE N  +TNG 
Sbjct: 1996 NYLADDKVEIKIPDLHQGLKESVQG--GIQSIQSSDGDNVDKVSATSSSNESNIQNTNGT 2053

Query: 183  LDGVHAKESFSYASLTVPSSPMISEKYIRKVPLTPS 290
            +D V   +  S ASL +  SP++SEK   ++P+T S
Sbjct: 2054 VDSVQLTDIQSSASLNILDSPILSEKSTSRIPVTNS 2089


Top