BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026328
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    62   1e-11
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...    62   1e-11
gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indi...    64   3e-10
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    69   4e-10
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...    69   5e-10

>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score = 61.6 bits (148), Expect(2) = 1e-11
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = -3

Query: 264 GDPLSPYLFIMLSEALSRLLFQAQAAQEISGIKISRRAPSISHMLYADDLFVF 106
           GDP+SPYLF++ +E LS LL + + A E+ GIK  R  P ISH+L+ADD   F
Sbjct: 651 GDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFF 703



 Score = 32.3 bits (72), Expect(2) = 1e-11
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 113 LFFGKTSTTEVEHINRIMRLYCDAIDQLVNWDKSSI 6
           +FF K  +  V+ +   +R YC A  Q +N  KSSI
Sbjct: 701 IFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSI 736


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
           protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score = 61.6 bits (148), Expect(2) = 1e-11
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = -3

Query: 264 GDPLSPYLFIMLSEALSRLLFQAQAAQEISGIKISRRAPSISHMLYADDLFVF 106
           GDP+SPYLF++ +E LS LL + + A E+ GIK  R  P ISH+L+ADD   F
Sbjct: 608 GDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFF 660



 Score = 32.3 bits (72), Expect(2) = 1e-11
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 113 LFFGKTSTTEVEHINRIMRLYCDAIDQLVNWDKSSI 6
           +FF K  +  V+ +   +R YC A  Q +N  KSSI
Sbjct: 658 IFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSI 693


>gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indica Group]
           gi|222630794|gb|EEE62926.1| hypothetical protein
           OsJ_17731 [Oryza sativa Japonica Group]
          Length = 893

 Score = 63.9 bits (154), Expect(2) = 3e-10
 Identities = 25/55 (45%), Positives = 43/55 (78%)
 Frame = -3

Query: 264 GDPLSPYLFIMLSEALSRLLFQAQAAQEISGIKISRRAPSISHMLYADDLFVFWE 100
           GDP+SPYLF++ +E  S LL+ A+   ++SG+K+ ++APS+SH+L+ADD  + ++
Sbjct: 311 GDPISPYLFLICAEGFSSLLYAAEERGDLSGVKVCQQAPSVSHLLFADDSLLLFK 365



 Score = 25.4 bits (54), Expect(2) = 3e-10
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 113 LFFGKTSTTEVEHINRIMRLYCDAIDQLVNWDKSSIL 3
           L   K +    + +  ++ LY     Q+VN DKSSI+
Sbjct: 361 LLLFKVNERSAQCLQNVLNLYESCSGQIVNKDKSSIM 397


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/55 (58%), Positives = 43/55 (78%)
 Frame = -3

Query: 264  GDPLSPYLFIMLSEALSRLLFQAQAAQEISGIKISRRAPSISHMLYADDLFVFWE 100
            GDPLSPYLFI+ +E LS L+ QA+ +  ISG KI + AP ISH+L+ADD F+F++
Sbjct: 1060 GDPLSPYLFIICAEGLSSLIRQAEGSGTISGAKICKNAPIISHLLFADDCFLFFK 1114


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 29/59 (49%), Positives = 45/59 (76%)
 Frame = -3

Query: 264 GDPLSPYLFIMLSEALSRLLFQAQAAQEISGIKISRRAPSISHMLYADDLFVFWENIDN 88
           GDPLSPYLFI+ +E +S L+ QA+    + G+K+ +RAP++SH+L+ADD F+F+   +N
Sbjct: 228 GDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDSFLFFRANEN 286