BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026296
         (521 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27495.3| unnamed protein product [Vitis vinifera]              114   6e-24
emb|CBI24106.3| unnamed protein product [Vitis vinifera]              112   3e-23
ref|XP_002521865.1| pentatricopeptide repeat-containing protein,...   100   1e-19
ref|XP_002314741.1| predicted protein [Populus trichocarpa] gi|2...   100   1e-19
ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containi...    95   7e-18

>emb|CBI27495.3| unnamed protein product [Vitis vinifera]
          Length = 552

 Score =  114 bits (286), Expect = 6e-24
 Identities = 53/92 (57%), Positives = 71/92 (77%)
 Frame = +3

Query: 246 DNLNDFICGLSKDRRTEALAFEYYQKAKAQPEFVPNKLTIKLLVRLITSCLKARKFSTTE 425
           +NLNDF+CGL +D R+E LAF+YYQK K +PEF P+K T++ ++RLI+SC++ARKF  TE
Sbjct: 51  ENLNDFLCGLFRDPRSEELAFDYYQKVKERPEFRPDKETLERIIRLISSCIRARKFRITE 110

Query: 426 VLLGSFESEDGLAVFAFESAMKGYHKLHMYSS 521
            LL  F   D +A+  F SAM GY+KLHM+SS
Sbjct: 111 SLLEVFSYNDDVALLVFNSAMGGYNKLHMFSS 142


>emb|CBI24106.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  112 bits (280), Expect = 3e-23
 Identities = 59/127 (46%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
 Frame = +3

Query: 150 LPSLLEQGATKE---LQTTEIDKSFADAQQNVVSKDNLNDFICGLSKDRRTEALAFEYYQ 320
           LP ++   +T +   L   E+D    D        +NLNDF+CGL +D R+E LAF+YYQ
Sbjct: 5   LPRVISLESTHDHHHLPVIELDVELPDLTPK---DENLNDFLCGLFRDPRSEELAFDYYQ 61

Query: 321 KAKAQPEFVPNKLTIKLLVRLITSCLKARKFSTTEVLLGSFESEDGLAVFAFESAMKGYH 500
           K K +PEF P+K T++ ++RLI+SC++ARKF  TE LL  F   D +A+    SAM GY+
Sbjct: 62  KVKERPEFRPDKETLERIIRLISSCIRARKFRITESLLEVFSYNDDVALLVCNSAMGGYN 121

Query: 501 KLHMYSS 521
           KLHM+SS
Sbjct: 122 KLHMFSS 128


>ref|XP_002521865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538903|gb|EEF40501.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 449

 Score =  100 bits (250), Expect = 1e-19
 Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 37/207 (17%)
 Frame = +3

Query: 12  EWSFTSISPCKE----ILPKSSNGSSKILSFPSVSRSNFGSFYVNVAGSQLPSLLEQGAT 179
           +WS  SI  C++    I+   S  +   LS P  S  N   F +N +    P +LE+ +T
Sbjct: 8   DWSVASIKSCRKPHKIIVFTPSWKTLPFLSLPCFS--NLSLFQLNASSCPSP-ILEEPST 64

Query: 180 KELQTTEIDKSFADAQQ-NVVSKDNLNDFICGLSKDRRTEALAFEYYQKAKAQPEFVPNK 356
                 ++D    ++Q+  +    +LN F+CG+ +D RTE LA+EYY+KA  + EF P+K
Sbjct: 65  N-FPVIQLDFRVQNSQEYQIPDSKSLNKFLCGILRDPRTEHLAYEYYKKATERQEFRPDK 123

Query: 357 LTIKLLV--------------------------------RLITSCLKARKFSTTEVLLGS 440
             +KLL+                                RL+ SC+K RKF   E LL  
Sbjct: 124 PMLKLLIRYLMQSKNWDLILPVADDFNKYNVLPDSNTCSRLVYSCIKTRKFRIVESLLEC 183

Query: 441 FESEDGLAVFAFESAMKGYHKLHMYSS 521
           F+    + V AF+SAM+GY+KLHMYSS
Sbjct: 184 FKCYSEIPVLAFDSAMRGYNKLHMYSS 210


>ref|XP_002314741.1| predicted protein [Populus trichocarpa] gi|222863781|gb|EEF00912.1|
           predicted protein [Populus trichocarpa]
          Length = 525

 Score =  100 bits (250), Expect = 1e-19
 Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 32/124 (25%)
 Frame = +3

Query: 246 DNLNDFICGLSKDRRTEALAFEYYQKAKAQPEFVPNKLTIKLLVR--------------- 380
           D LNDF+CG+ +D ++E LA+EYY+KAK +PEF P +  +KLL+R               
Sbjct: 2   DKLNDFLCGVLQDPKSEELAYEYYKKAKEKPEFRPQRPVLKLLIRYLIQSDKWGLVLSLA 61

Query: 381 -----------------LITSCLKARKFSTTEVLLGSFESEDGLAVFAFESAMKGYHKLH 509
                            L++SC++AR+F   E LL +F+S+  +AV AF+SAMKGY+KLH
Sbjct: 62  DDFKKYNVFPDSFTFSTLVSSCIRARRFKIVENLLENFKSDSKIAVLAFDSAMKGYNKLH 121

Query: 510 MYSS 521
           MY S
Sbjct: 122 MYGS 125


>ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Glycine max]
          Length = 609

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 37/178 (20%)
 Frame = +3

Query: 93  PSVSRSNFGSFYVNVAGSQLPSLLEQGATKELQTT--EIDKSFADAQQNVVSK---DNLN 257
           PS     F  F+ N + S  P L E+ ++    T    +D +FA   Q   SK   +NLN
Sbjct: 32  PSHHHRRFFFFHANFSASPTPILEEEPSSSNTPTIIHVVDVNFAADVQKQYSKPEPENLN 91

Query: 258 DFICGLSKDRRTEALAFEYYQKAKAQPEFVPNKLTIKLLVRLITS--------------- 392
           +F+CGL +D +T+ LAF+YYQ+ K +PEF P K T+K ++R + S               
Sbjct: 92  EFLCGLFEDPKTKELAFDYYQRLKERPEFRPEKPTLKHVIRYLVSLKSWGSILSVSEDFK 151

Query: 393 -----------------CLKARKFSTTEVLLGSFESEDGLAVFAFESAMKGYHKLHMY 515
                            C++ RKF   E LL  F+ +  +A  AF SAM+ Y+KLHM+
Sbjct: 152 VYHVLPDRATCSRLVKFCIEHRKFRVAESLLYVFKDDSKVAFLAFSSAMRSYNKLHMF 209