BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026251
         (643 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003616691.1| chromosome segregation protein SMC [methanoc...    57   3e-06
ref|XP_001579765.1| viral A-type inclusion protein [Trichomonas ...    56   7e-06

>ref|YP_003616691.1| chromosome segregation protein SMC [methanocaldococcus infernus ME]
            gi|295434556|gb|ADG13727.1| chromosome segregation
            protein SMC [Methanocaldococcus infernus ME]
          Length = 1142

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 47/190 (24%), Positives = 94/190 (49%), Gaps = 2/190 (1%)
 Frame = +2

Query: 53   VKTAVVRAKEIHEKVVKKNIVLNEVNALE-EIKKVKILNQKLEEANKALSGTIKELEDEN 229
            V+  + + KEI +K+V+ N   NE   LE EI+K K LN+ L E  K +   I ELE ++
Sbjct: 769  VQEKINKLKEIEKKIVELN---NEKLGLEKEIEKCKSLNKLLLERIKEIEEKIDELERKD 825

Query: 230  KNLXXXXXXXXXXXXXXFGKACEITEEHKHLKADVIELKSLVATKDQELKRAQKEVEKNN 409
            K +                +  ++ E ++ +   + EL +   + ++EL+  + + E+  
Sbjct: 826  KAIITNIGVYEDNIKKKELELMKLKERYEKISEKMKELNNKKRSLEEELRELEIKREELL 885

Query: 410  KRMTDLNERLGQDHVQMAHCESSVRQLTETLIETGDELEREKMNYKDLYEL-YMRKVGKK 586
            + + D+ + + + H++ A  ES + +  + L    +   RE++  KD+ EL ++     K
Sbjct: 886  REIRDIEKEINKLHIEKAKYESKLEEERKELYIQEETKVREEIKEKDIKELEFLISEIDK 945

Query: 587  PLDFPKPMNM 616
             +   +P+NM
Sbjct: 946  EIKALEPVNM 955


>ref|XP_001579765.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
            gi|121913975|gb|EAY18779.1| viral A-type inclusion
            protein, putative [Trichomonas vaginalis G3]
          Length = 883

 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 43/175 (24%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
 Frame = +2

Query: 8    EYDRAMSMIFDSI----NQVKTAVVRAKEIHEKVVKKNIVLNEVNALEEIKKVKI--LNQ 169
            E D+ ++ + +S+    N++       KE+ E V  K   +N+ N L      KI  LNQ
Sbjct: 711  EKDKTIANLNESLLEKDNEITKKDELIKELQESVQTKETEINQKNELISSNNTKIDELNQ 770

Query: 170  KLEEANKALS---GTIKELEDENKNLXXXXXXXXXXXXXXFGKACEITEEHKHL---KAD 331
            ++ E N  +S    ++KE+ D+   L                K  EI ++++ L   +  
Sbjct: 771  QINELNAQISDKENSLKEITDKVHTLEETVQ----------NKETEINQKNEELSERETK 820

Query: 332  VIELKSLVATKDQELKRAQKEVEKNNKRMTDLNERLGQDHVQMAHCESSVRQLTE 496
            + EL  +++ KD E+++  +E+  NN ++ +LN+       Q+++ E+S+++LT+
Sbjct: 821  INELNEIISQKDSEIQQKNEEISSNNSKIEELNQ-------QISNKENSLQELTD 868



 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 22/199 (11%)
 Frame = +2

Query: 2    IGEYDRAMSMIFDSINQVKTAVVRAKEIHEKVVKKNIVLNEVNALEEIKKVKI------- 160
            I E + +++   + IN   TA+    E++ ++ +K+  +NE+N   + K+ KI       
Sbjct: 615  ISELNESINEKINEINNTNTAI---NELNNQIKEKDEKINELNNQNQEKQNKIDELNELN 671

Query: 161  ------------LNQKLEEANKALSGTIKELEDENKNLXXXXXXXXXXXXXXFGKACEIT 304
                        LN++  E    ++   KE+E  N +                 K  EIT
Sbjct: 672  NTVQQNETKFGELNKENREKENRINELNKEIERINNSSSEKDKTIANLNESLLEKDNEIT 731

Query: 305  EEHKHLKADVIELKSLVATKDQELKRAQKEVEKNNKRMTDLNERLGQDHVQMAHCESSVR 484
            ++ + +K    EL+  V TK+ E+ +  + +  NN ++ +LN+++ + + Q++  E+S++
Sbjct: 732  KKDELIK----ELQESVQTKETEINQKNELISSNNTKIDELNQQINELNAQISDKENSLK 787

Query: 485  QLTE---TLIETGDELERE 532
            ++T+   TL ET    E E
Sbjct: 788  EITDKVHTLEETVQNKETE 806