BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026239
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    83   9e-19
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    77   2e-16
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    73   3e-15
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    79   5e-13
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    64   8e-12

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 83.2 bits (204), Expect(2) = 9e-19
 Identities = 35/83 (42%), Positives = 54/83 (65%)
 Frame = -3

Query: 264 LCQTCSE*LPVHNTAVYKWPKAVIK*GETIIRNFIWSGNPSVRKATTVSWEKTCKPTVEG 85
           L ++ ++ + +H   +Y WP  ++K  ET  RNFIWSG+ + RK  TV+W+K CKP  +G
Sbjct: 444 LIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQG 503

Query: 84  GLGLRKLQDINLAMIMKLAWSLI 16
           GLG+R L  +N A  +KL W ++
Sbjct: 504 GLGIRSLSQLNAAGNLKLCWDML 526



 Score = 35.0 bits (79), Expect(2) = 9e-19
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 371 FKGKVTKAAMTPLIDKLRKKAVGWVEHMLSF*GRVVFAKHVLNS 240
           FKGK     + P++DK++ K   W   +LS  GRV   K V  S
Sbjct: 408 FKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQS 451


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 76.6 bits (187), Expect(2) = 2e-16
 Identities = 33/71 (46%), Positives = 48/71 (67%)
 Frame = -3

Query: 231 HNTAVYKWPKAVIK*GETIIRNFIWSGNPSVRKATTVSWEKTCKPTVEGGLGLRKLQDIN 52
           H+  VY WP +++K  E  I+NFIWSG+ S RK  TV+W+K C+P  +GGL +R L  +N
Sbjct: 90  HSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWKKLCRPFDQGGLRIRSLIQLN 149

Query: 51  LAMIMKLAWSL 19
            A  +KL W++
Sbjct: 150 SASNLKLCWNI 160



 Score = 33.9 bits (76), Expect(2) = 2e-16
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 371 FKGKVTKAAMTPLIDKLRKKAVGWVEHMLSF*GRVVFAKHVLNS 240
           FKGK     + P++DK+  K   W   +LS  GRV   K V+ S
Sbjct: 43  FKGKPKVIHLQPIVDKIIAKLSTWKASLLSIAGRVQMVKSVIQS 86


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 73.2 bits (178), Expect(2) = 3e-15
 Identities = 32/76 (42%), Positives = 48/76 (63%)
 Frame = -3

Query: 234 VHNTAVYKWPKAVIK*GETIIRNFIWSGNPSVRKATTVSWEKTCKPTVEGGLGLRKLQDI 55
           VH  ++Y WP  ++K  E  I+NFIWSG+ + RK  TV+W K C    EGGLG++ L  +
Sbjct: 548 VHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICL 607

Query: 54  NLAMIMKLAWSLITEE 7
           N A  +K+ W+L+  +
Sbjct: 608 NEATNLKICWNLMQSD 623



 Score = 33.1 bits (74), Expect(2) = 3e-15
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 371 FKGKVTKAAMTPLIDKLRKKAVGWVEHMLSF*GRVVFAKHVLNS 240
           FKGK       P+ DK++ K   W   +LS  GR+   K V+ S
Sbjct: 502 FKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQS 545


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 31/77 (40%), Positives = 50/77 (64%)
 Frame = -3

Query: 234 VHNTAVYKWPKAVIK*GETIIRNFIWSGNPSVRKATTVSWEKTCKPTVEGGLGLRKLQDI 55
           +H   +Y+WP +++K  E  IRNF+W+G+ S +K  TV W   CKP  EGG+GL++L  +
Sbjct: 189 LHTFMMYRWPSSLLKSIEKAIRNFLWTGSVSYKKLVTVKWGHCCKPISEGGIGLKRLDVL 248

Query: 54  NLAMIMKLAWSLITEES 4
           N  M+ ++AW   + +S
Sbjct: 249 NRTMLCRIAWKFYSNDS 265


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 64.3 bits (155), Expect(2) = 8e-12
 Identities = 26/79 (32%), Positives = 45/79 (56%)
 Frame = -3

Query: 240 LPVHNTAVYKWPKAVIK*GETIIRNFIWSGNPSVRKATTVSWEKTCKPTVEGGLGLRKLQ 61
           +PVH+ +    P++++   + + R F+W      +K   V W K C P  EGGLG+R  +
Sbjct: 48  MPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAK 107

Query: 60  DINLAMIMKLAWSLITEES 4
            +N A+I K+ W L+ E++
Sbjct: 108 SMNRALISKVGWRLLQEKN 126



 Score = 30.4 bits (67), Expect(2) = 8e-12
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 362 KVTKAAMTPLIDKLRKKAVGWVEHMLSF*GRVVFAKHVLNS 240
           ++ K     +++++  +  GW E  LSF GR+   K VL+S
Sbjct: 7   RINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSS 47