BLASTX nr result
ID: Coptis25_contig00026236
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00026236 (456 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot... 145 2e-34 gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum... 146 5e-34 sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding pro... 142 5e-34 gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa] 147 7e-34 gb|AFK40061.1| unknown [Medicago truncatula] 147 7e-34 >gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya cathayensis] Length = 267 Score = 145 bits (367), Expect(2) = 2e-34 Identities = 73/99 (73%), Positives = 76/99 (76%), Gaps = 3/99 (3%) Frame = -1 Query: 288 QSRITMRXXXXXXXXXXXXSP*YGPDRVKYLGPFSGASPSYLTGEFPGDYGWDTAGLSAD 109 + R+TMR SP YGPDRVKYLGPFSG PSYLTGEFPGDYGWDTAGLSAD Sbjct: 30 EGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 89 Query: 108 QETFAKNHELEVIHSRWAMLGAFGCVFPELV---*VKFG 1 ETFAKN ELEVIHSRWAMLGA GCVFPEL+ VKFG Sbjct: 90 PETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 128 Score = 25.0 bits (53), Expect(2) = 2e-34 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = -3 Query: 355 ASQVALEAHAGVGKSLKLAPSNSE 284 AS +AL + + G+++KLAPS+S+ Sbjct: 3 ASTMALSSPSLAGQAIKLAPSSSD 26 >gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum] Length = 267 Score = 146 bits (368), Expect(2) = 5e-34 Identities = 74/99 (74%), Positives = 76/99 (76%), Gaps = 3/99 (3%) Frame = -1 Query: 288 QSRITMRXXXXXXXXXXXXSP*YGPDRVKYLGPFSGASPSYLTGEFPGDYGWDTAGLSAD 109 + RITMR SP YGPDRVKYLGPFSG SPSYLTGEFPGDYGWDTAGLSAD Sbjct: 30 EGRITMRKAAGKSKVATIDSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSAD 89 Query: 108 QETFAKNHELEVIHSRWAMLGAFGCVFPELV---*VKFG 1 ETFAKN ELEVIH RWAMLGA GCVFPEL+ VKFG Sbjct: 90 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128 Score = 23.1 bits (48), Expect(2) = 5e-34 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -3 Query: 355 ASQVALEAHAGVGKSLKLAPSNSE 284 +S +AL + + GK++KL+P+ SE Sbjct: 3 SSTMALSSPSFAGKAVKLSPTASE 26 >sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Allergen=Api g 3; Flags: Precursor gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens] Length = 264 Score = 142 bits (357), Expect(2) = 5e-34 Identities = 68/79 (86%), Positives = 70/79 (88%), Gaps = 3/79 (3%) Frame = -1 Query: 228 P*YGPDRVKYLGPFSGASPSYLTGEFPGDYGWDTAGLSADQETFAKNHELEVIHSRWAML 49 P YGPDRVKYLGPFSG +PSYLTGEFPGDYGWDTAGLSAD ETFAKN ELEVIHSRWAML Sbjct: 47 PWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 106 Query: 48 GAFGCVFPELV---*VKFG 1 GA GCVFPEL+ VKFG Sbjct: 107 GALGCVFPELLARNGVKFG 125 Score = 27.3 bits (59), Expect(2) = 5e-34 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -3 Query: 355 ASQVALEAHAGVGKSLKLAPSNSE 284 AS +AL + A GK++K+APS+SE Sbjct: 3 ASTMALSSPALAGKAVKVAPSSSE 26 >gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa] Length = 266 Score = 147 bits (372), Expect = 7e-34 Identities = 80/117 (68%), Positives = 82/117 (70%), Gaps = 3/117 (2%) Frame = -1 Query: 342 PSKLTPE*GNP*SSLHPTQSRITMRXXXXXXXXXXXXSP*YGPDRVKYLGPFSGASPSYL 163 P KLTP SS +R TMR SP YGPDRVKYLGPFSG PSYL Sbjct: 17 PVKLTP------SSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYL 70 Query: 162 TGEFPGDYGWDTAGLSADQETFAKNHELEVIHSRWAMLGAFGCVFPELV---*VKFG 1 TGEFPGDYGWDTAGLSAD ETFAKN ELEVIHSRWAMLGA GCVFPEL+ VKFG Sbjct: 71 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 127 >gb|AFK40061.1| unknown [Medicago truncatula] Length = 266 Score = 147 bits (372), Expect = 7e-34 Identities = 80/117 (68%), Positives = 82/117 (70%), Gaps = 3/117 (2%) Frame = -1 Query: 342 PSKLTPE*GNP*SSLHPTQSRITMRXXXXXXXXXXXXSP*YGPDRVKYLGPFSGASPSYL 163 P KLTP SS +R TMR SP YGPDRVKYLGPFSG PSYL Sbjct: 17 PVKLTP------SSQELGAARFTMRKAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYL 70 Query: 162 TGEFPGDYGWDTAGLSADQETFAKNHELEVIHSRWAMLGAFGCVFPELV---*VKFG 1 TGEFPGDYGWDTAGLSAD ETFAKN ELEVIHSRWAMLGA GCVFPEL+ VKFG Sbjct: 71 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 127