BLASTX nr result

ID: Coptis25_contig00026213 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026213
         (600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633439.1| PREDICTED: putative ABC1 protein At2g40090 i...   169   3e-40
ref|XP_002270951.1| PREDICTED: putative ABC1 protein At2g40090 i...   169   3e-40
ref|XP_002533645.1| ATATH9, putative [Ricinus communis] gi|22352...   164   1e-38
ref|XP_002311218.1| predicted protein [Populus trichocarpa] gi|2...   158   6e-37
ref|XP_004166850.1| PREDICTED: putative ABC1 protein At2g40090-l...   156   2e-36

>ref|XP_003633439.1| PREDICTED: putative ABC1 protein At2g40090 isoform 2 [Vitis
           vinifera]
          Length = 549

 Score =  169 bits (428), Expect = 3e-40
 Identities = 84/109 (77%), Positives = 96/109 (88%)
 Frame = +2

Query: 5   DRSELQMYASQYFPQISELLRRLPRVILLMLKTNDCLRAVTNCLLQGSSVETFLITGRIS 184
           DRSELQMYASQYFPQI+ELLRRLPRVILLMLKTNDCLRAV N LLQGSS+ETF+I G+++
Sbjct: 440 DRSELQMYASQYFPQITELLRRLPRVILLMLKTNDCLRAVNNSLLQGSSLETFMIIGKVA 499

Query: 185 SEAVIEAKMSQKKSFLSGFSIWLEGIVLEVRLFSMQIALWLLSFTKLLS 331
           SEAV EAKMSQ++SFL   ++WLEGI+LE RLF MQIALWLL   K L+
Sbjct: 500 SEAVAEAKMSQRRSFLCWINVWLEGILLEARLFGMQIALWLLQVRKALT 548


>ref|XP_002270951.1| PREDICTED: putative ABC1 protein At2g40090 isoform 1 [Vitis
           vinifera] gi|297736618|emb|CBI25489.3| unnamed protein
           product [Vitis vinifera]
          Length = 538

 Score =  169 bits (428), Expect = 3e-40
 Identities = 84/109 (77%), Positives = 96/109 (88%)
 Frame = +2

Query: 5   DRSELQMYASQYFPQISELLRRLPRVILLMLKTNDCLRAVTNCLLQGSSVETFLITGRIS 184
           DRSELQMYASQYFPQI+ELLRRLPRVILLMLKTNDCLRAV N LLQGSS+ETF+I G+++
Sbjct: 429 DRSELQMYASQYFPQITELLRRLPRVILLMLKTNDCLRAVNNSLLQGSSLETFMIIGKVA 488

Query: 185 SEAVIEAKMSQKKSFLSGFSIWLEGIVLEVRLFSMQIALWLLSFTKLLS 331
           SEAV EAKMSQ++SFL   ++WLEGI+LE RLF MQIALWLL   K L+
Sbjct: 489 SEAVAEAKMSQRRSFLCWINVWLEGILLEARLFGMQIALWLLQVRKALT 537


>ref|XP_002533645.1| ATATH9, putative [Ricinus communis] gi|223526458|gb|EEF28733.1|
           ATATH9, putative [Ricinus communis]
          Length = 549

 Score =  164 bits (414), Expect = 1e-38
 Identities = 84/111 (75%), Positives = 94/111 (84%)
 Frame = +2

Query: 2   SDRSELQMYASQYFPQISELLRRLPRVILLMLKTNDCLRAVTNCLLQGSSVETFLITGRI 181
           ++RSELQMYASQYFPQISELLRRLPRVILLMLKTNDCLRAV N LLQG S+ETF I G++
Sbjct: 437 NERSELQMYASQYFPQISELLRRLPRVILLMLKTNDCLRAVNNSLLQGYSLETFFIIGKV 496

Query: 182 SSEAVIEAKMSQKKSFLSGFSIWLEGIVLEVRLFSMQIALWLLSFTKLLSG 334
           SSEAVIEAK  Q+KSFLS   IWLE I+LE RL +MQIALWLL   + L+G
Sbjct: 497 SSEAVIEAKKLQRKSFLSRLDIWLEEILLEARLLAMQIALWLLQVRRALTG 547


>ref|XP_002311218.1| predicted protein [Populus trichocarpa] gi|222851038|gb|EEE88585.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  158 bits (400), Expect = 6e-37
 Identities = 81/111 (72%), Positives = 93/111 (83%)
 Frame = +2

Query: 2   SDRSELQMYASQYFPQISELLRRLPRVILLMLKTNDCLRAVTNCLLQGSSVETFLITGRI 181
           S+RSE QMYASQ+FPQISELLRRLPRVILLMLKTNDCLR+V +CLLQGSSVETF I G++
Sbjct: 402 SERSERQMYASQFFPQISELLRRLPRVILLMLKTNDCLRSVNSCLLQGSSVETFFIIGKV 461

Query: 182 SSEAVIEAKMSQKKSFLSGFSIWLEGIVLEVRLFSMQIALWLLSFTKLLSG 334
           SSEAV+EAK  Q+KS LS   + LE I+LEVRL  MQIALWLL   + L+G
Sbjct: 462 SSEAVVEAKKLQRKSLLSRLDVLLEEILLEVRLLGMQIALWLLHLRRALTG 512


>ref|XP_004166850.1| PREDICTED: putative ABC1 protein At2g40090-like [Cucumis sativus]
          Length = 538

 Score =  156 bits (395), Expect = 2e-36
 Identities = 76/109 (69%), Positives = 92/109 (84%)
 Frame = +2

Query: 2   SDRSELQMYASQYFPQISELLRRLPRVILLMLKTNDCLRAVTNCLLQGSSVETFLITGRI 181
           ++RSELQ YAS+YFPQISELLR+LPRVILLMLKTNDCLRAV NCLLQGSS+ETFLI G++
Sbjct: 428 NERSELQTYASEYFPQISELLRKLPRVILLMLKTNDCLRAVNNCLLQGSSLETFLIIGKV 487

Query: 182 SSEAVIEAKMSQKKSFLSGFSIWLEGIVLEVRLFSMQIALWLLSFTKLL 328
           SSEAVIEAK+S+ KS     + WL+ ++LE R F++Q+ALWLL   K L
Sbjct: 488 SSEAVIEAKLSENKSLTCWLNAWLDEVMLEARFFTLQLALWLLHLKKAL 536


Top