BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026169
         (483 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284586.1| PREDICTED: psbP domain-containing protein 5,...   105   4e-21
ref|NP_196706.2| PsbP domain-containing protein 5 [Arabidopsis t...    99   3e-19
ref|XP_002871475.1| hypothetical protein ARALYDRAFT_487981 [Arab...    99   4e-19
emb|CAB87705.1| putative protein [Arabidopsis thaliana]                99   4e-19
ref|XP_002309586.1| predicted protein [Populus trichocarpa] gi|2...    99   5e-19

>ref|XP_002284586.1| PREDICTED: psbP domain-containing protein 5, chloroplastic [Vitis
           vinifera] gi|296081930|emb|CBI20935.3| unnamed protein
           product [Vitis vinifera]
          Length = 284

 Score =  105 bits (262), Expect = 4e-21
 Identities = 61/127 (48%), Positives = 78/127 (61%)
 Frame = +2

Query: 50  PNLPILTSVSCMSRHHNKVFLNRSTRSCSAIHSLENEYQTQGFKDTTGFGKRELMLFGLS 229
           PNL I  + +    +  K  L     SCS + S  N           GF +R+L+LFG S
Sbjct: 7   PNLLIFRNHTRTMVNQKKCGLPEKIISCSCVPSRPNS--------KIGFYRRDLILFGFS 58

Query: 230 SSVSMLLSTAVAAAATETDKKLKMALVVDDINAYSFLYPLEMPSKKFVFKWVKSRKPERY 409
           SS +++   +       T+++ KMA VVDDINAYS+LYPLE+PSKK VFKWV+SRKPERY
Sbjct: 59  SSAALIFPPS----GYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERY 114

Query: 410 SSAEPLS 430
           SSA PLS
Sbjct: 115 SSAAPLS 121


>ref|NP_196706.2| PsbP domain-containing protein 5 [Arabidopsis thaliana]
           gi|190358920|sp|P82715.3|PPD5_ARATH RecName: Full=PsbP
           domain-containing protein 5, chloroplastic; AltName:
           Full=OEC23-like protein 6; AltName: Full=PsbP-related
           thylakoid lumenal protein 4; AltName: Full=Thylakoid
           lumenal 35.8 kDa protein; Flags: Precursor
           gi|18252955|gb|AAL62404.1| putative protein [Arabidopsis
           thaliana] gi|21389651|gb|AAM48024.1| putative protein
           [Arabidopsis thaliana] gi|332004298|gb|AED91681.1| PsbP
           domain-containing protein 5 [Arabidopsis thaliana]
          Length = 297

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 56/124 (45%), Positives = 72/124 (58%), Gaps = 12/124 (9%)
 Frame = +2

Query: 95  HNKVFLNRSTRSCSAIHSLENEYQ-------TQGFKDTTGFGKRELMLFGLSSSVSMLLS 253
           ++++F  RS+   S  H    E         T+      G  +R+L+L GLSS +SM L 
Sbjct: 12  NSRLFRCRSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLP 71

Query: 254 TAVAAAATETDKK-----LKMALVVDDINAYSFLYPLEMPSKKFVFKWVKSRKPERYSSA 418
            +      E D K     LKM  +VDDINAYS+ YPL+ PS+K VFKWV+SRKPERYSSA
Sbjct: 72  LSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSA 131

Query: 419 EPLS 430
            PLS
Sbjct: 132 APLS 135


>ref|XP_002871475.1| hypothetical protein ARALYDRAFT_487981 [Arabidopsis lyrata subsp.
           lyrata] gi|297317312|gb|EFH47734.1| hypothetical protein
           ARALYDRAFT_487981 [Arabidopsis lyrata subsp. lyrata]
          Length = 297

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 56/124 (45%), Positives = 73/124 (58%), Gaps = 12/124 (9%)
 Frame = +2

Query: 95  HNKVFLNRSTRSCSAIHSLENEY-------QTQGFKDTTGFGKRELMLFGLSSSVSMLLS 253
           ++++F  R++   S  H    E         T+      G  +R+L+L GLSS +SMLL 
Sbjct: 12  NSRLFRCRNSNISSKYHGESKELVIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMLLP 71

Query: 254 TAVAAAATETDKKL-----KMALVVDDINAYSFLYPLEMPSKKFVFKWVKSRKPERYSSA 418
            +      E D KL     KM  +VDDINAYS+ YPL+ PS+K VFKWV+SRKPERYSSA
Sbjct: 72  LSSPVTHAEEDLKLGTEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSA 131

Query: 419 EPLS 430
            PLS
Sbjct: 132 APLS 135


>emb|CAB87705.1| putative protein [Arabidopsis thaliana]
          Length = 319

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 60/139 (43%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
 Frame = +2

Query: 50  PNLPILTSVSCMSRHHNKVFLNRSTRSCSAIHSLENEYQ-------TQGFKDTTGFGKRE 208
           P   I  ++ C S       L RS+   S  H    E         T+      G  +R+
Sbjct: 13  PEHAIAMALLCPSLPSPNSRLFRSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRD 72

Query: 209 LMLFGLSSSVSMLLSTAVAAAATETDKK-----LKMALVVDDINAYSFLYPLEMPSKKFV 373
           L+L GLSS +SM L  +      E D K     LKM  +VDDINAYS+ YPL+ PS+K V
Sbjct: 73  LVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLV 132

Query: 374 FKWVKSRKPERYSSAEPLS 430
           FKWV+SRKPERYSSA PLS
Sbjct: 133 FKWVESRKPERYSSAAPLS 151


>ref|XP_002309586.1| predicted protein [Populus trichocarpa] gi|222855562|gb|EEE93109.1|
           predicted protein [Populus trichocarpa]
          Length = 295

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 57/123 (46%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
 Frame = +2

Query: 86  SRHHNKVFLNRST-----RSCSAIHSLENEYQTQGFKDTT---GFGKRELMLFGLSSSVS 241
           + HHN  F N+S      + C     +          D +   GF +R+L+LFGLSSS+S
Sbjct: 14  THHHNPFFRNQSRILLSQKKCKLKEKIMACSCACSSSDPSLQNGFCRRDLVLFGLSSSLS 73

Query: 242 MLLSTAVAAAATETDKKLKMALVVDDINAYSFLYPLEMPSKKFVFKWVKSRKPERYSSAE 421
           +   ++   A    ++ LKMA VVD+INAY++ YP E+PSKKF+FKWV+SRKPERYSSA 
Sbjct: 74  IAFPSSEILA----EEDLKMASVVDEINAYTYSYPAELPSKKFLFKWVESRKPERYSSAA 129

Query: 422 PLS 430
           PLS
Sbjct: 130 PLS 132