BLASTX nr result

ID: Coptis25_contig00026126 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026126
         (596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71330.1| hypothetical protein VITISV_031551 [Vitis vinifera]    72   7e-11
ref|XP_002324808.1| predicted protein [Populus trichocarpa] gi|2...    56   5e-06
ref|XP_002309551.1| predicted protein [Populus trichocarpa] gi|2...    56   5e-06

>emb|CAN71330.1| hypothetical protein VITISV_031551 [Vitis vinifera]
          Length = 1388

 Score = 72.0 bits (175), Expect = 7e-11
 Identities = 33/66 (50%), Positives = 49/66 (74%)
 Frame = -1

Query: 536  STRRREFCSMNRNPADFTVPEAGNEYMIGYGDLKPKENVLSRDRTGLVEPVGNKRQKMVK 357
            S    E CS+N+NPADF+VP AGN YMIG  DLK  +++ S +R GL+   G+K++++VK
Sbjct: 1316 SRSETEICSINKNPADFSVPVAGNIYMIGAEDLKFGKSISSENRNGLINVDGHKKKRVVK 1375

Query: 356  LTAIKD 339
            LT++K+
Sbjct: 1376 LTSVKE 1381


>ref|XP_002324808.1| predicted protein [Populus trichocarpa] gi|222866242|gb|EEF03373.1|
           predicted protein [Populus trichocarpa]
          Length = 540

 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = -1

Query: 536 STRRREFCSMNRNPADFTVPEAGNEYMIGYGDLKPKENVLSRDRTGLVEPVGNKRQKMVK 357
           S+   E CS+NRNPADFT+PEAGN YMI    L+ +++V   + +  ++  G KRQ+  K
Sbjct: 470 SSSETEVCSVNRNPADFTIPEAGNMYMIAGEALRFEKDVPFANGSHSLKLDGRKRQR--K 527

Query: 356 LTAIKD 339
           L A+KD
Sbjct: 528 LPAMKD 533


>ref|XP_002309551.1| predicted protein [Populus trichocarpa] gi|222855527|gb|EEE93074.1|
            predicted protein [Populus trichocarpa]
          Length = 1309

 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 33/65 (50%), Positives = 43/65 (66%)
 Frame = -1

Query: 536  STRRREFCSMNRNPADFTVPEAGNEYMIGYGDLKPKENVLSRDRTGLVEPVGNKRQKMVK 357
            S+   E CS+NRNPADFTVPEAGN YMI   DLK ++ V   + +  ++  G KRQ+  K
Sbjct: 1236 SSSETEVCSVNRNPADFTVPEAGNMYMIVGEDLKFEKEVPFVNGSRSLKLDGPKRQR--K 1293

Query: 356  LTAIK 342
            L A+K
Sbjct: 1294 LPAVK 1298


Top