BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026086
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002872815.1| pentatricopeptide repeat-containing protein ...    82   3e-27
gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japo...    92   3e-27
ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group] g...    92   3e-27
gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]         89   7e-27
ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containi...    88   1e-26

>ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297318652|gb|EFH49074.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 776

 Score = 82.4 bits (202), Expect(2) = 3e-27
 Identities = 34/68 (50%), Positives = 52/68 (76%)
 Frame = +3

Query: 3   NMITWSALISGYGCHGFGSKALDLFEQMKREGFIPDEAAFLSVLSACSHSGLVSEGKEFF 182
           ++++W+ +I+GY  HGFG +AL  FE MKREG  PD+A  ++VLSACSH+GLV +G+++F
Sbjct: 469 DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 528

Query: 183 NLMHKHTG 206
           + M +  G
Sbjct: 529 HTMTQDYG 536



 Score = 64.3 bits (155), Expect(2) = 3e-27
 Identities = 26/44 (59%), Positives = 35/44 (79%)
 Frame = +2

Query: 194 QTYGMSPGLKHYACVIDLLGRAGLIGEAWDMIEGMPFEPDTNIW 325
           Q YG+ P  +HYAC++DLLGRAGL+ EA ++++ MPFEPD  IW
Sbjct: 533 QDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIW 576


>gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score = 91.7 bits (226), Expect(2) = 3e-27
 Identities = 40/68 (58%), Positives = 53/68 (77%)
 Frame = +3

Query: 3   NMITWSALISGYGCHGFGSKALDLFEQMKREGFIPDEAAFLSVLSACSHSGLVSEGKEFF 182
           ++ITW+A+I GYG HGFG  A++LFE+MK  G +P+E  FLSVLSACSH+GLV EG+E+F
Sbjct: 428 HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYF 487

Query: 183 NLMHKHTG 206
             M +  G
Sbjct: 488 TSMKEDYG 495



 Score = 55.1 bits (131), Expect(2) = 3e-27
 Identities = 20/44 (45%), Positives = 32/44 (72%)
 Frame = +2

Query: 194 QTYGMSPGLKHYACVIDLLGRAGLIGEAWDMIEGMPFEPDTNIW 325
           + YG+ PG++HY  ++DLLGRAG + EAW  I+ MP +P  +++
Sbjct: 492 EDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535


>ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
           gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza
           sativa Japonica Group] gi|215737111|dbj|BAG96040.1|
           unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score = 91.7 bits (226), Expect(2) = 3e-27
 Identities = 40/68 (58%), Positives = 53/68 (77%)
 Frame = +3

Query: 3   NMITWSALISGYGCHGFGSKALDLFEQMKREGFIPDEAAFLSVLSACSHSGLVSEGKEFF 182
           ++ITW+A+I GYG HGFG  A++LFE+MK  G +P+E  FLSVLSACSH+GLV EG+E+F
Sbjct: 428 HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYF 487

Query: 183 NLMHKHTG 206
             M +  G
Sbjct: 488 TSMKEDYG 495



 Score = 55.1 bits (131), Expect(2) = 3e-27
 Identities = 20/44 (45%), Positives = 32/44 (72%)
 Frame = +2

Query: 194 QTYGMSPGLKHYACVIDLLGRAGLIGEAWDMIEGMPFEPDTNIW 325
           + YG+ PG++HY  ++DLLGRAG + EAW  I+ MP +P  +++
Sbjct: 492 EDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535


>gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score = 88.6 bits (218), Expect(2) = 7e-27
 Identities = 39/68 (57%), Positives = 53/68 (77%)
 Frame = +3

Query: 3   NMITWSALISGYGCHGFGSKALDLFEQMKREGFIPDEAAFLSVLSACSHSGLVSEGKEFF 182
           ++ITW+A+I GYG HGFG  A++LFE+MK  G +P+E  FLSVL+ACSH+GLV EG+++F
Sbjct: 387 HVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYF 446

Query: 183 NLMHKHTG 206
             M K  G
Sbjct: 447 ASMKKDYG 454



 Score = 57.0 bits (136), Expect(2) = 7e-27
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +2

Query: 200 YGMSPGLKHYACVIDLLGRAGLIGEAWDMIEGMPFEPDTNIW 325
           YG+ PG++HY  ++DLLGRAG + EAW  I+ MP EP  +++
Sbjct: 453 YGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVY 494


>ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score = 88.2 bits (217), Expect(2) = 1e-26
 Identities = 39/68 (57%), Positives = 53/68 (77%)
 Frame = +3

Query: 3   NMITWSALISGYGCHGFGSKALDLFEQMKREGFIPDEAAFLSVLSACSHSGLVSEGKEFF 182
           ++ITW+A+I GYG HG G  A++LFE+MK  G +P+E  FLSVLSACSH+GLV EG+E+F
Sbjct: 594 HVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYF 653

Query: 183 NLMHKHTG 206
           + M +  G
Sbjct: 654 SSMKEDYG 661



 Score = 56.6 bits (135), Expect(2) = 1e-26
 Identities = 21/44 (47%), Positives = 32/44 (72%)
 Frame = +2

Query: 194 QTYGMSPGLKHYACVIDLLGRAGLIGEAWDMIEGMPFEPDTNIW 325
           + YG+ PG++HY  ++DLLGRAG + EAW  I+ MP EP  +++
Sbjct: 658 EDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVY 701