BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026081
         (1321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263...   405   e-110
ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putat...   380   e-103
ref|XP_002888602.1| hypothetical protein ARALYDRAFT_894489 [Arab...   376   e-102
gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from...   375   e-101
gb|AAG52299.1|AC011020_6 putative DNA polymerase zeta catalytic ...   375   e-101

>ref|XP_002280635.2| PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera]
          Length = 2002

 Score =  405 bits (1041), Expect = e-110
 Identities = 219/346 (63%), Positives = 259/346 (74%), Gaps = 3/346 (0%)
 Frame = -2

Query: 1029 GHVPHMESSSDQLIQK--DNRNSMKVNNLSEVMTERHSEGTPMKGNEHIDSCQDISQISG 856
            G V H++   DQ   +  DN N+ K     +V  +   +G  MK  +  +  QDISQISG
Sbjct: 229  GSVSHVKPVLDQQNHEIHDNLNAKKNAFHDKVPEKTQVKGNIMKVKKCTNCSQDISQISG 288

Query: 855  PDMRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIAVRIQD 676
            P+ +SK TPLSQ GFRDPASVG GQQ+TL+SIE+QAESRGDLRPDPR DA+ VI + IQ+
Sbjct: 289  PEEKSKPTPLSQIGFRDPASVGGGQQVTLLSIEIQAESRGDLRPDPRYDAINVIVLLIQE 348

Query: 675  DNDLGLETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGW 496
            D+D  LE FVL R N  E  QR LD ISGC V+V  EEK LF  F+ I+ S DPDIL+GW
Sbjct: 349  DDDSALEVFVLCRSNI-EPCQRKLDGISGCKVLVSSEEKLLFDDFINIICSFDPDILIGW 407

Query: 495  EIQGGSLGFLAERAAHLGILLLSTISRTPS-CETEARNSATGEIRVQDDLLPEALVTDPG 319
            +IQGGSLGFLAERA+HLGI LL+ ISRTPS  +T +RN    E RV D++LPE LV D  
Sbjct: 408  DIQGGSLGFLAERASHLGIGLLNKISRTPSETKTASRNFEIPEKRVADEMLPENLVDDSV 467

Query: 318  VFGNTIIEDEWGRTHASDVHVGGRIVLNIWRLMRGEIKLNMYTMEAVAEEVLRRKVPLIP 139
            +    IIEDEWGRTHAS VHVGGRIVLN+WRLMRGEIKLNMYT E+VAE VLR+K+P I 
Sbjct: 468  LLEEAIIEDEWGRTHASGVHVGGRIVLNVWRLMRGEIKLNMYTAESVAEAVLRQKIPSIR 527

Query: 138  PRILAQWFSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSEL 1
             R+L +WFSSGPGRAR+R IEY+I+R KLN EIM+QLDMINRTSEL
Sbjct: 528  NRVLTKWFSSGPGRARYRSIEYVIQRAKLNFEIMNQLDMINRTSEL 573


>ref|XP_002512387.1| DNA polymerase zeta catalytic subunit, putative [Ricinus communis]
            gi|223548348|gb|EEF49839.1| DNA polymerase zeta catalytic
            subunit, putative [Ricinus communis]
          Length = 2066

 Score =  380 bits (975), Expect = e-103
 Identities = 200/344 (58%), Positives = 250/344 (72%), Gaps = 3/344 (0%)
 Frame = -2

Query: 1023 VPHMESSSDQLIQKDNR--NSMKVNNLSEVMTERHSEGTPMKGNEHIDSCQDISQISGPD 850
            V ++    DQ+ Q++++  NS    N  E+    H +    K N   +   D+SQISGP+
Sbjct: 252  VSNVRLIEDQVQQEEHQIINSEFHPNTDELQRPLHHKENNAKLNACTECSIDLSQISGPN 311

Query: 849  MRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIAVRIQDDN 670
             RS+ TPLSQ GFRDPAS GAGQQLT++SIEVQAESRGDLRPDPR DA+  +A+  Q+DN
Sbjct: 312  ERSRPTPLSQIGFRDPASTGAGQQLTMLSIEVQAESRGDLRPDPRFDAINTVALAFQNDN 371

Query: 669  DLGLETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPDILMGWEI 490
            D  +E  VLL  N+ ES+ R+ D +S   V+   EE HL  HF++I+ S DPDILMGW+I
Sbjct: 372  DSTVEVQVLLHSNK-ESYARSSDGLSVNKVLYFSEEVHLVTHFIRIIGSVDPDILMGWDI 430

Query: 489  QGGSLGFLAERAAHLGILLLSTISRTP-SCETEARNSATGEIRVQDDLLPEALVTDPGVF 313
            QGGSLGFLAERAAHLG+ LL+ ISRTP      AR +   +  +   +L E+LV +  + 
Sbjct: 431  QGGSLGFLAERAAHLGMGLLNNISRTPLEANIGARETEISDKEILATMLDESLVAESALV 490

Query: 312  GNTIIEDEWGRTHASDVHVGGRIVLNIWRLMRGEIKLNMYTMEAVAEEVLRRKVPLIPPR 133
               +IEDEWGRTHAS VHVGGRIVLNIWRL+R E+KLN+YT+EAV E VLRRK+P IP R
Sbjct: 491  EQAVIEDEWGRTHASGVHVGGRIVLNIWRLIRNEVKLNLYTVEAVGEAVLRRKIPSIPYR 550

Query: 132  ILAQWFSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSEL 1
            +L +WFSSGPGRAR+RCIEY++ R KLNLEIM+QLDMINRTSEL
Sbjct: 551  VLTKWFSSGPGRARYRCIEYMVHRAKLNLEIMNQLDMINRTSEL 594


>ref|XP_002888602.1| hypothetical protein ARALYDRAFT_894489 [Arabidopsis lyrata subsp.
            lyrata] gi|297334443|gb|EFH64861.1| hypothetical protein
            ARALYDRAFT_894489 [Arabidopsis lyrata subsp. lyrata]
          Length = 1899

 Score =  376 bits (966), Expect = e-102
 Identities = 226/472 (47%), Positives = 287/472 (60%), Gaps = 37/472 (7%)
 Frame = -2

Query: 1305 PPSVDSISEWL------------LHHP--PKHDAT-GTRKNISSKVLESPSPGGNNRLDF 1171
            PPSVD +S  L             HH    +HD   G  K+I    LE      +    F
Sbjct: 831  PPSVDCLSSGLHDSGHSHDILAQFHHAREKQHDGCEGNSKDIPFFPLEDTGINKDGNKHF 890

Query: 1170 SKEND------SFNDGKT------ASEPPKLQSVLA------DDLELIYSQEHLVNSFHE 1045
             +           NDG        A  PP + SVL        D  +   ++ L +   +
Sbjct: 891  FQGASLGIPLHHLNDGSNLYLLAPALSPPSVDSVLQWIAEDKGDYNIDSEKQPLEDDHID 950

Query: 1044 FSDKFGHVPHMESSSDQLIQKDNRNSMKVNNLSEVMTERHSE----GTPMKGNEHIDSCQ 877
                F  +    +         + N++ VN+ S   TE   +    GT +  N  I   Q
Sbjct: 951  RGASFTDLASASNVVSVSEHVQHHNNVFVNSESNTYTESEIDLKRRGTFLNLNSQIS--Q 1008

Query: 876  DISQISGPDMRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTV 697
            ++SQISGPD +S  TPLSQ GFRDPAS+GAGQQLT++SIEV AESRGDLRPDPR D+V V
Sbjct: 1009 EMSQISGPDGKSGPTPLSQMGFRDPASMGAGQQLTVLSIEVHAESRGDLRPDPRFDSVNV 1068

Query: 696  IAVRIQDDNDLGLETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSD 517
            IA+ +Q+D+    E FVLL   +    QRN+D +SGC   V LEE+ LF +F++ +   D
Sbjct: 1069 IALVVQNDDSFVAEVFVLLVSPDSID-QRNVDGLSGCKFSVFLEERQLFSYFIETLCKWD 1127

Query: 516  PDILMGWEIQGGSLGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQDDLLPEA 337
            PDIL+GW+IQGGS+GFLAERAA LGI  L+ ISRTPS  T  RN +  + ++  +LLP+ 
Sbjct: 1128 PDILLGWDIQGGSIGFLAERAAQLGIRFLNNISRTPSPTT--RNDSDNKRKLGKNLLPDP 1185

Query: 336  LVTDPGVFGNTIIEDEWGRTHASDVHVGGRIVLNIWRLMRGEIKLNMYTMEAVAEEVLRR 157
            LV DP      +IEDEWGRTHAS VHVGGRIVLN WRL+RGE+KLNMYT+EAV+E VLR+
Sbjct: 1186 LVADPAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQ 1245

Query: 156  KVPLIPPRILAQWFSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSEL 1
            K+P IP ++L +WFSSGP  AR+RCIEY++ RT LNLEIM QLDMINRTSEL
Sbjct: 1246 KIPSIPYKVLTEWFSSGPAGARYRCIEYVVRRTNLNLEIMSQLDMINRTSEL 1297


>gb|AAC18785.1| Similar to putative DNA polymerase gb|M29683 from S. cerevisiae
            [Arabidopsis thaliana]
          Length = 1894

 Score =  375 bits (962), Expect = e-101
 Identities = 218/470 (46%), Positives = 285/470 (60%), Gaps = 35/470 (7%)
 Frame = -2

Query: 1305 PPSVDSISEWLLHHPPKHDATGTRKNISSKVLESPSPGGNNRLDFSKENDS--------- 1153
            PPS+D +S  L      H+     K            G +N + F    D+         
Sbjct: 832  PPSLDCLSAGLQDSAHSHEIHAREKQ------HDEYEGNSNDIPFFPLEDNKEEKKHFFQ 885

Query: 1152 ----------FNDGKT------ASEPPKLQSVLA------DDLELIYSQEHLVNSFHEFS 1039
                       NDG        A  PP + SVL        D  +   ++ L ++ ++  
Sbjct: 886  GTSLGIPLHHLNDGSNLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRG 945

Query: 1038 DKFGHVPHMESSSDQLIQKDNRNSMKVNNLSEVMTERHSE----GTPMKGNEHIDSCQDI 871
              F  +    +        +  N++ VN+ S   TE   +    GT +  N      Q++
Sbjct: 946  ASFTDLASASNVVSVSEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQEL 1005

Query: 870  SQISGPDMRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIA 691
            SQISGPD +S  TPLSQ GFRDPAS+GAGQQLT++SIEV AESRGDLRPDPR D+V VIA
Sbjct: 1006 SQISGPDGKSGPTPLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIA 1065

Query: 690  VRIQDDNDLGLETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPD 511
            + +Q+D+    E FVLL   +    QRN+D +SGC + V LEE+ LF +F++ +   DPD
Sbjct: 1066 LVVQNDDSFVAEVFVLLFSPDSID-QRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPD 1124

Query: 510  ILMGWEIQGGSLGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQDDLLPEALV 331
            +L+GW+IQGGS+GFLAERAA LGI  L+ ISRTPS  T   N++  + ++ ++LLP+ LV
Sbjct: 1125 VLLGWDIQGGSIGFLAERAAQLGIRFLNNISRTPSPTTT--NNSDNKRKLGNNLLPDPLV 1182

Query: 330  TDPGVFGNTIIEDEWGRTHASDVHVGGRIVLNIWRLMRGEIKLNMYTMEAVAEEVLRRKV 151
             +P      +IEDEWGRTHAS VHVGGRIVLN WRL+RGE+KLNMYT+EAV+E VLR+KV
Sbjct: 1183 ANPAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKV 1242

Query: 150  PLIPPRILAQWFSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSEL 1
            P IP ++L +WFSSGP  AR+RCIEY+I R  LNLEIM QLDMINRTSEL
Sbjct: 1243 PSIPYKVLTEWFSSGPAGARYRCIEYVIRRANLNLEIMSQLDMINRTSEL 1292


>gb|AAG52299.1|AC011020_6 putative DNA polymerase zeta catalytic subunit [Arabidopsis thaliana]
          Length = 1871

 Score =  375 bits (962), Expect = e-101
 Identities = 218/470 (46%), Positives = 285/470 (60%), Gaps = 35/470 (7%)
 Frame = -2

Query: 1305 PPSVDSISEWLLHHPPKHDATGTRKNISSKVLESPSPGGNNRLDFSKENDS--------- 1153
            PPS+D +S  L      H+     K            G +N + F    D+         
Sbjct: 832  PPSLDCLSAGLQDSAHSHEIHAREKQ------HDEYEGNSNDIPFFPLEDNKEEKKHFFQ 885

Query: 1152 ----------FNDGKT------ASEPPKLQSVLA------DDLELIYSQEHLVNSFHEFS 1039
                       NDG        A  PP + SVL        D  +   ++ L ++ ++  
Sbjct: 886  GTSLGIPLHHLNDGSNLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRG 945

Query: 1038 DKFGHVPHMESSSDQLIQKDNRNSMKVNNLSEVMTERHSE----GTPMKGNEHIDSCQDI 871
              F  +    +        +  N++ VN+ S   TE   +    GT +  N      Q++
Sbjct: 946  ASFTDLASASNVVSVSEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQEL 1005

Query: 870  SQISGPDMRSKLTPLSQTGFRDPASVGAGQQLTLMSIEVQAESRGDLRPDPRNDAVTVIA 691
            SQISGPD +S  TPLSQ GFRDPAS+GAGQQLT++SIEV AESRGDLRPDPR D+V VIA
Sbjct: 1006 SQISGPDGKSGPTPLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIA 1065

Query: 690  VRIQDDNDLGLETFVLLRGNEGESFQRNLDAISGCTVIVVLEEKHLFYHFVKIVRSSDPD 511
            + +Q+D+    E FVLL   +    QRN+D +SGC + V LEE+ LF +F++ +   DPD
Sbjct: 1066 LVVQNDDSFVAEVFVLLFSPDSID-QRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPD 1124

Query: 510  ILMGWEIQGGSLGFLAERAAHLGILLLSTISRTPSCETEARNSATGEIRVQDDLLPEALV 331
            +L+GW+IQGGS+GFLAERAA LGI  L+ ISRTPS  T   N++  + ++ ++LLP+ LV
Sbjct: 1125 VLLGWDIQGGSIGFLAERAAQLGIRFLNNISRTPSPTTT--NNSDNKRKLGNNLLPDPLV 1182

Query: 330  TDPGVFGNTIIEDEWGRTHASDVHVGGRIVLNIWRLMRGEIKLNMYTMEAVAEEVLRRKV 151
             +P      +IEDEWGRTHAS VHVGGRIVLN WRL+RGE+KLNMYT+EAV+E VLR+KV
Sbjct: 1183 ANPAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKV 1242

Query: 150  PLIPPRILAQWFSSGPGRARFRCIEYIIERTKLNLEIMDQLDMINRTSEL 1
            P IP ++L +WFSSGP  AR+RCIEY+I R  LNLEIM QLDMINRTSEL
Sbjct: 1243 PSIPYKVLTEWFSSGPAGARYRCIEYVIRRANLNLEIMSQLDMINRTSEL 1292