BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026074
         (1418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [S...   362   1e-97
ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containi...   360   7e-97
ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group] g...   354   4e-95
gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]        354   4e-95
ref|XP_002322762.1| predicted protein [Populus trichocarpa] gi|2...   335   2e-89

>ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
            gi|241932439|gb|EES05584.1| hypothetical protein
            SORBIDRAFT_04g028970 [Sorghum bicolor]
          Length = 485

 Score =  362 bits (929), Expect = 1e-97
 Identities = 178/372 (47%), Positives = 246/372 (66%), Gaps = 1/372 (0%)
 Frame = -1

Query: 1415 SLIHMYAKCDKIESVCKVFQGMSLDDKNVVSWNSIIDAFVKAGDVDSARRLFNEMPERNV 1236
            SLI  YA+  ++    KVF GM   D+ VV+WN ++DA V+ GD+D+A  +F EMP+RNV
Sbjct: 100  SLIRAYARLGRVCDARKVFDGMP--DRTVVTWNVLLDALVRDGDLDAAWEVFVEMPQRNV 157

Query: 1235 VSWNSIIAGCAKESLFDEAFRLFLRLQLS-GLVPDETTLMTIISVISNLGLLCLGKQIHG 1059
            VSWN+IIAG  +     EA  LF+ + ++ GL PDE T++  +S + ++GLL +GK  HG
Sbjct: 158  VSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIGKSAHG 217

Query: 1058 YVIRNEFSLDAGFGAALIDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNGFAE 879
            YV+R EFSLD   G ALI MY++CG++ +A   F     KN V HWTS+I G+A +G  E
Sbjct: 218  YVLRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVTTKN-VEHWTSLIAGFAAHGQPE 276

Query: 878  ASLRLFSQMQACGVKPNYVTFVGVLNACSHGGLVEQGIRLFNLMKTYNIEPGIQHYGCLV 699
             +LRLF++M+  G++PN VTFV VLNAC+HGGLV +G + F+LM++  I P IQHYGCLV
Sbjct: 277  KALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFKYFDLMRSMGIRPMIQHYGCLV 336

Query: 698  DLLGRSNLVREAKMLIDYMPMEPGAVIWSTLLAACRKHGDIEIGEIAAQKLVELAPDYGG 519
            DLLGR+  ++EA  L   +P +PG VIWS+LLAAC  HGD+E+ E+ A KL +  P +G 
Sbjct: 337  DLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACHSHGDVEMAELTASKLADAKPSHGS 396

Query: 518  GYILLSNLYANSCKWXXXXXXXXXXXXXXXEKVAGLSWIEVDGEIHEFLVGDKFHPRSME 339
             Y+LLSN YA + +W                K  GLSWIEVDG +H F   DK H  S +
Sbjct: 397  SYVLLSNTYARAKQWEDLRRTRRRMEEHGVTKKPGLSWIEVDGGVHSFATADKLHMESED 456

Query: 338  IHRLLDAIQCKL 303
            I+++L+ ++  L
Sbjct: 457  IYQMLEDLKHNL 468


>ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Brachypodium distachyon]
          Length = 491

 Score =  360 bits (923), Expect = 7e-97
 Identities = 177/372 (47%), Positives = 246/372 (66%), Gaps = 1/372 (0%)
 Frame = -1

Query: 1415 SLIHMYAKCDKIESVCKVFQGMSLDDKNVVSWNSIIDAFVKAGDVDSARRLFNEMPERNV 1236
            SL  +YA+  ++    KVF GM   +  VVSWN ++D FV+AGD+D+A  LF EM ERNV
Sbjct: 108  SLARVYARHGRLADARKVFDGMP--ETTVVSWNVLLDGFVRAGDLDAAWELFVEMTERNV 165

Query: 1235 VSWNSIIAGCAKESLFDEAFRLFLRLQ-LSGLVPDETTLMTIISVISNLGLLCLGKQIHG 1059
            VSWN+++ G A+     EA  LF+ +  + GLVPDE T++  +S + N+GLL LG+  HG
Sbjct: 166  VSWNTVMVGFARLGRAQEAVELFVEMTTVYGLVPDEATMVGFVSAVRNIGLLGLGRSAHG 225

Query: 1058 YVIRNEFSLDAGFGAALIDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNGFAE 879
            YVIR EFSLD   G  LI+MY++CG++ +A   F    +KN V HWTS I G+A +G  +
Sbjct: 226  YVIRREFSLDGALGVGLINMYTRCGSMTAAYLCFSSVTSKN-VEHWTSAIGGFAAHGHPD 284

Query: 878  ASLRLFSQMQACGVKPNYVTFVGVLNACSHGGLVEQGIRLFNLMKTYNIEPGIQHYGCLV 699
             +LRLF++M+  G++PN VTFV VLNACSHGGLV++G + FN+M+   I P IQHYGCLV
Sbjct: 285  MALRLFAEMRELGIEPNDVTFVAVLNACSHGGLVDEGFKYFNMMRKMGIRPSIQHYGCLV 344

Query: 698  DLLGRSNLVREAKMLIDYMPMEPGAVIWSTLLAACRKHGDIEIGEIAAQKLVELAPDYGG 519
            DLLGR+  + EA  L   +P +PG V WS+LLAAC+ HG++++ E+AAQKL +  P++G 
Sbjct: 345  DLLGRAGFLEEAFNLASSLPKDPGFVTWSSLLAACQTHGNVDMAEVAAQKLADAEPNHGS 404

Query: 518  GYILLSNLYANSCKWXXXXXXXXXXXXXXXEKVAGLSWIEVDGEIHEFLVGDKFHPRSME 339
             Y+LLSN YA + +W                K  GLSWIEVDG +H F   DK H  +  
Sbjct: 405  SYVLLSNAYARAGQWEDLKRTRSRMEAHRAVKKPGLSWIEVDGSVHSFGTADKSHTENKG 464

Query: 338  IHRLLDAIQCKL 303
            I+++L+ ++  L
Sbjct: 465  IYQMLENLKLNL 476


>ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
            gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR)
            repeat-containing protein-like [Oryza sativa Japonica
            Group] gi|46390866|dbj|BAD16370.1| pentatricopeptide
            (PPR) repeat-containing protein-like [Oryza sativa
            Japonica Group] gi|113537548|dbj|BAF09931.1| Os02g0730900
            [Oryza sativa Japonica Group] gi|125541007|gb|EAY87402.1|
            hypothetical protein OsI_08809 [Oryza sativa Indica
            Group] gi|125583571|gb|EAZ24502.1| hypothetical protein
            OsJ_08263 [Oryza sativa Japonica Group]
          Length = 488

 Score =  354 bits (908), Expect = 4e-95
 Identities = 171/372 (45%), Positives = 247/372 (66%), Gaps = 1/372 (0%)
 Frame = -1

Query: 1415 SLIHMYAKCDKIESVCKVFQGMSLDDKNVVSWNSIIDAFVKAGDVDSARRLFNEMPERNV 1236
            SL+ +YA+  ++    K+F GM +  K VVSWN ++D  V+A D+D+A  +F EMPERNV
Sbjct: 105  SLVRVYARLGRLGDARKMFDGMPV--KTVVSWNVLLDGIVRASDLDAAWEVFVEMPERNV 162

Query: 1235 VSWNSIIAGCAKESLFDEAFRLFLRLQLS-GLVPDETTLMTIISVISNLGLLCLGKQIHG 1059
            VSWN++IAG  +     EA  LF  + +  GL PDE T++  +S + ++G+L +G+  HG
Sbjct: 163  VSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDMGVLGIGRCAHG 222

Query: 1058 YVIRNEFSLDAGFGAALIDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNGFAE 879
            YVIR EFSLD   G ALI+MY++CG++  A + F    +KN V  WTS+I G+A +G  E
Sbjct: 223  YVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKN-VEQWTSVIGGFAAHGHPE 281

Query: 878  ASLRLFSQMQACGVKPNYVTFVGVLNACSHGGLVEQGIRLFNLMKTYNIEPGIQHYGCLV 699
             +LRLF++M+  G++PN VTF+ VLNACSHGGLV +G + FNLM++  I+  +QHYGCL+
Sbjct: 282  MALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGCLI 341

Query: 698  DLLGRSNLVREAKMLIDYMPMEPGAVIWSTLLAACRKHGDIEIGEIAAQKLVELAPDYGG 519
            DLLGR+  + EA  L   +P +PG VIWS+LLAAC+ HG++E+ E+AA+KL    P +G 
Sbjct: 342  DLLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSHGNVEMAEVAARKLAHAEPRHGS 401

Query: 518  GYILLSNLYANSCKWXXXXXXXXXXXXXXXEKVAGLSWIEVDGEIHEFLVGDKFHPRSME 339
             Y+LLSN YA + +W                K  GLSWIE+DG +H F+  DK H  S +
Sbjct: 402  SYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLSWIELDGRVHSFVSADKLHTESED 461

Query: 338  IHRLLDAIQCKL 303
            I+++L+ ++  L
Sbjct: 462  IYQMLEDLKVNL 473


>gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
          Length = 488

 Score =  354 bits (908), Expect = 4e-95
 Identities = 172/369 (46%), Positives = 244/369 (66%), Gaps = 1/369 (0%)
 Frame = -1

Query: 1415 SLIHMYAKCDKIESVCKVFQGMSLDDKNVVSWNSIIDAFVKAGDVDSARRLFNEMPERNV 1236
            SLI  YA+  ++    KVF GM+  D+ VV+WN ++DA ++ GD+D+A  +F +MP+RN 
Sbjct: 104  SLIRAYARLGRVCDARKVFDGMA--DRTVVTWNVLLDALIRDGDLDAAWEVFVKMPQRNA 161

Query: 1235 VSWNSIIAGCAKESLFDEAFRLFLRLQLS-GLVPDETTLMTIISVISNLGLLCLGKQIHG 1059
            VSWN+II+G A+      A  LF+ + ++ GL PDE T++  +S + ++GLL +GK  HG
Sbjct: 162  VSWNTIISGFARNGWAPVAVDLFIEMTVAYGLAPDEATMVGFVSAVRDIGLLAIGKSAHG 221

Query: 1058 YVIRNEFSLDAGFGAALIDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNGFAE 879
            YV+R EFSLD   G AL+ MY++CG++ +A   F     KN V HWTS+I G+A +G  E
Sbjct: 222  YVLRREFSLDGPLGVALVSMYTRCGSMGAAHSCFLSVTTKN-VEHWTSLIAGFAAHGQPE 280

Query: 878  ASLRLFSQMQACGVKPNYVTFVGVLNACSHGGLVEQGIRLFNLMKTYNIEPGIQHYGCLV 699
             +LRLF +M+  G++PN VTFV VL+ACSHGGLV++G + F+LM++  I P IQHYGCLV
Sbjct: 281  NALRLFVEMRQVGIEPNGVTFVAVLSACSHGGLVDEGFKYFDLMRSMGIRPMIQHYGCLV 340

Query: 698  DLLGRSNLVREAKMLIDYMPMEPGAVIWSTLLAACRKHGDIEIGEIAAQKLVELAPDYGG 519
            DLLGR+  ++EA  L   +P +PG VIWS+LLAACR HG++E+ E+ A KL E  P +G 
Sbjct: 341  DLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACRSHGNVEMAELTASKLAEAKPSHGS 400

Query: 518  GYILLSNLYANSCKWXXXXXXXXXXXXXXXEKVAGLSWIEVDGEIHEFLVGDKFHPRSME 339
             Y+LLSN YA + +W                K  GLSWIE+DG +H F   DK H  S  
Sbjct: 401  SYVLLSNTYARAEQWEDSKRTRRRMEEHRVAKKPGLSWIEIDGSVHSFATADKLHIESEG 460

Query: 338  IHRLLDAIQ 312
            I+ +L+ ++
Sbjct: 461  IYHMLEDLK 469


>ref|XP_002322762.1| predicted protein [Populus trichocarpa] gi|222867392|gb|EEF04523.1|
            predicted protein [Populus trichocarpa]
          Length = 617

 Score =  335 bits (859), Expect = 2e-89
 Identities = 163/374 (43%), Positives = 250/374 (66%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1418 NSLIHMYAKCDKIESVCKVFQGMSLDDKNVVSWNSIIDAFVKAGDVDSARRLFNEMPERN 1239
            NSL+ MY+    I+S   VF+ +S  D  VVSW S++  ++K+GDV SAR+LF++MPE+N
Sbjct: 152  NSLVTMYSTLGDIKSASYVFRRISCLD--VVSWTSMVAGYIKSGDVTSARKLFDKMPEKN 209

Query: 1238 VVSWNSIIAGCAKESLFDEAFRLFLRLQLSGLVPDETTLMTIISVISNLGLLCLGKQIHG 1059
            +V+W+ +I+G AK S FD+A  L+  LQ  G+  +ET ++++I+  ++LG L LG++ H 
Sbjct: 210  LVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHD 269

Query: 1058 YVIRNEFSLDAGFGAALIDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNGFAE 879
            Y++RN+ +++   G AL+DMY++CG+I  A+ VF     ++ +  WT++I G+A++G+AE
Sbjct: 270  YILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALS-WTTLIAGFAMHGYAE 328

Query: 878  ASLRLFSQMQACGVKPNYVTFVGVLNACSHGGLVEQGIRLFNLMK-TYNIEPGIQHYGCL 702
             +L  FS+M+  G+ P  +TF  VL+ACSHGGLVE+G+ LF  MK  Y IEP ++HYGC+
Sbjct: 329  KALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCM 388

Query: 701  VDLLGRSNLVREAKMLIDYMPMEPGAVIWSTLLAACRKHGDIEIGEIAAQKLVELAPDYG 522
            VDLLGR+  + EA+  ++ MPM+P A IW  LL ACR H + EI E A + L+EL P++ 
Sbjct: 389  VDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHS 448

Query: 521  GGYILLSNLYANSCKWXXXXXXXXXXXXXXXEKVAGLSWIEVDGEIHEFLVGDKFHPRSM 342
            G Y+LLSN+YA + KW                K  G +  E+DG++H+F +GDK HP   
Sbjct: 449  GYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQ 508

Query: 341  EIHRLLDAIQCKLR 300
            +I R+ + I  K+R
Sbjct: 509  QIERMWEEILGKIR 522



 Score =  109 bits (273), Expect = 2e-21
 Identities = 76/284 (26%), Positives = 130/284 (45%), Gaps = 30/284 (10%)
 Frame = -1

Query: 1334 NVVSWNSIIDAFVKAGDVDSARRLFNEMPERNVVSWNSIIAGCAKESLFDEAFRLFLRLQ 1155
            +V + + +I   +    +D A ++F ++   N+  +NS I G +     D++F  +++ +
Sbjct: 46   DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105

Query: 1154 LSGLVPDETTLMTIISVISNLGLLCLGKQIHGYVIRNEFSLDAGFGAALIDMYSKCGTIH 975
             +GLVPD  T   ++   +  G L +G Q HG +IR+ F  D     +L+ MYS  G I 
Sbjct: 106  RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165

Query: 974  SALKVFQ------------------------------DTQNKNNVGHWTSMIVGYAVNGF 885
            SA  VF+                              D   + N+  W+ MI GYA N F
Sbjct: 166  SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSF 225

Query: 884  AEASLRLFSQMQACGVKPNYVTFVGVLNACSHGGLVEQGIRLFNLMKTYNIEPGIQHYGC 705
             + ++ L+  +Q+ GV  N    V V+ +C+H G +E G R  + +    +   +     
Sbjct: 226  FDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTA 285

Query: 704  LVDLLGRSNLVREAKMLIDYMPMEPGAVIWSTLLAACRKHGDIE 573
            LVD+  R   + +A  + D +P    A+ W+TL+A    HG  E
Sbjct: 286  LVDMYARCGSIDKAIWVFDQLPGR-DALSWTTLIAGFAMHGYAE 328