BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026035
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   102   2e-20
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   101   7e-20
ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transc...    95   5e-18
gb|AFW61224.1| BSD domain containing protein [Zea mays]                93   3e-17
gb|AFW61223.1| hypothetical protein ZEAMMB73_026868 [Zea mays]         93   3e-17

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  102 bits (255), Expect = 2e-20
 Identities = 52/106 (49%), Positives = 74/106 (69%)
 Frame = -3

Query: 320 VEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLMNLSLGTQKS 141
           +  MTEIEDL+ P +L  A LCIKD + YFDSQQA++L+TLGD    +K +  SL TQ++
Sbjct: 384 ISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEA 443

Query: 140 FDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAKYHICK 3
           + SL+  +SE+K     +P+V+   ALKVLN LT++ SS K+H+ K
Sbjct: 444 YGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGK 489


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  101 bits (251), Expect = 7e-20
 Identities = 51/106 (48%), Positives = 74/106 (69%)
 Frame = -3

Query: 320 VEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLMNLSLGTQKS 141
           +  MTEIEDL+ P +L  A LCIKD + YFDSQQA++L+TLGD    +K +  SL +Q++
Sbjct: 427 ISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEA 486

Query: 140 FDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAKYHICK 3
           + SL+  +SE+K     +P+V+   ALKVLN LT++ SS K+H+ K
Sbjct: 487 YGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGK 532


>ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 604

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 47/106 (44%), Positives = 72/106 (67%)
 Frame = -3

Query: 320 VEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLMNLSLGTQKS 141
           +  MT IEDL+   N   APLCIKD + YFDSQQA++++TL D++   + M  SLG++++
Sbjct: 387 ISKMTPIEDLQAQDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQAGMEQMKCSLGSEEA 446

Query: 140 FDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAKYHICK 3
           +DSL+  +S++K     +P+     ALKVLN LT++ +S KYH+ K
Sbjct: 447 YDSLRASISKIKTTGLRDPLFSPDVALKVLNGLTKNITSTKYHLGK 492


>gb|AFW61224.1| BSD domain containing protein [Zea mays]
          Length = 600

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 51/110 (46%), Positives = 72/110 (65%)
 Frame = -3

Query: 347 NENAPRAMVVEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLM 168
           ++N  R M V  MTEIEDL+ P +L  APLCIKD ++YFDSQQA++LR+LG +    K  
Sbjct: 375 DDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREYFDSQQANALRSLGGSNGGRKAH 434

Query: 167 NLSLGTQKSFDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAK 18
           + SL T++ F  L   +S +K N+   P+V+S  ALKVLN+L    S ++
Sbjct: 435 SCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKVLNELNEGISRSR 484


>gb|AFW61223.1| hypothetical protein ZEAMMB73_026868 [Zea mays]
          Length = 407

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 51/110 (46%), Positives = 72/110 (65%)
 Frame = -3

Query: 347 NENAPRAMVVEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLM 168
           ++N  R M V  MTEIEDL+ P +L  APLCIKD ++YFDSQQA++LR+LG +    K  
Sbjct: 182 DDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREYFDSQQANALRSLGGSNGGRKAH 241

Query: 167 NLSLGTQKSFDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAK 18
           + SL T++ F  L   +S +K N+   P+V+S  ALKVLN+L    S ++
Sbjct: 242 SCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKVLNELNEGISRSR 291