BLASTX nr result
ID: Coptis25_contig00026035
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00026035 (352 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc... 102 2e-20 emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera] 101 7e-20 ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transc... 95 5e-18 gb|AFW61224.1| BSD domain containing protein [Zea mays] 93 3e-17 gb|AFW61223.1| hypothetical protein ZEAMMB73_026868 [Zea mays] 93 3e-17 >ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed protein product [Vitis vinifera] Length = 602 Score = 102 bits (255), Expect = 2e-20 Identities = 52/106 (49%), Positives = 74/106 (69%) Frame = -3 Query: 320 VEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLMNLSLGTQKS 141 + MTEIEDL+ P +L A LCIKD + YFDSQQA++L+TLGD +K + SL TQ++ Sbjct: 384 ISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEA 443 Query: 140 FDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAKYHICK 3 + SL+ +SE+K +P+V+ ALKVLN LT++ SS K+H+ K Sbjct: 444 YGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGK 489 >emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera] Length = 735 Score = 101 bits (251), Expect = 7e-20 Identities = 51/106 (48%), Positives = 74/106 (69%) Frame = -3 Query: 320 VEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLMNLSLGTQKS 141 + MTEIEDL+ P +L A LCIKD + YFDSQQA++L+TLGD +K + SL +Q++ Sbjct: 427 ISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEA 486 Query: 140 FDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAKYHICK 3 + SL+ +SE+K +P+V+ ALKVLN LT++ SS K+H+ K Sbjct: 487 YGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGK 532 >ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Glycine max] Length = 604 Score = 95.1 bits (235), Expect = 5e-18 Identities = 47/106 (44%), Positives = 72/106 (67%) Frame = -3 Query: 320 VEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLMNLSLGTQKS 141 + MT IEDL+ N APLCIKD + YFDSQQA++++TL D++ + M SLG++++ Sbjct: 387 ISKMTPIEDLQAQDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQAGMEQMKCSLGSEEA 446 Query: 140 FDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAKYHICK 3 +DSL+ +S++K +P+ ALKVLN LT++ +S KYH+ K Sbjct: 447 YDSLRASISKIKTTGLRDPLFSPDVALKVLNGLTKNITSTKYHLGK 492 >gb|AFW61224.1| BSD domain containing protein [Zea mays] Length = 600 Score = 92.8 bits (229), Expect = 3e-17 Identities = 51/110 (46%), Positives = 72/110 (65%) Frame = -3 Query: 347 NENAPRAMVVEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLM 168 ++N R M V MTEIEDL+ P +L APLCIKD ++YFDSQQA++LR+LG + K Sbjct: 375 DDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREYFDSQQANALRSLGGSNGGRKAH 434 Query: 167 NLSLGTQKSFDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAK 18 + SL T++ F L +S +K N+ P+V+S ALKVLN+L S ++ Sbjct: 435 SCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKVLNELNEGISRSR 484 >gb|AFW61223.1| hypothetical protein ZEAMMB73_026868 [Zea mays] Length = 407 Score = 92.8 bits (229), Expect = 3e-17 Identities = 51/110 (46%), Positives = 72/110 (65%) Frame = -3 Query: 347 NENAPRAMVVEGMTEIEDLRDPHNLHSAPLCIKDLQQYFDSQQADSLRTLGDAEVVTKLM 168 ++N R M V MTEIEDL+ P +L APLCIKD ++YFDSQQA++LR+LG + K Sbjct: 182 DDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREYFDSQQANALRSLGGSNGGRKAH 241 Query: 167 NLSLGTQKSFDSLKTLVSEMKENKFGEPVVRSGTALKVLNDLTRHHSSAK 18 + SL T++ F L +S +K N+ P+V+S ALKVLN+L S ++ Sbjct: 242 SCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKVLNELNEGISRSR 291