BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00026014
         (388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi...    67   1e-09
emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]    67   1e-09
ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containi...    59   4e-07
ref|XP_002523384.1| pentatricopeptide repeat-containing protein,...    55   4e-06

>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 35/83 (42%), Positives = 48/83 (57%)
 Frame = +1

Query: 136 LLKASLKTMFCTLSTVLRLSSYFSRRKLHTSADIYFLPLLNQCSNFKHINLAHGYMVPRG 315
           LL+ S   +F T +      SY            + L LL QCSN KH++  H +M+ RG
Sbjct: 21  LLQTSRAALFSTATAAAASPSY------------HLLSLLKQCSNLKHLHQTHCFMLSRG 68

Query: 316 LDQNNLLLSKFIDTCSVLGFTAY 384
           LDQ+N+LLS+FI+ CS LGF+ Y
Sbjct: 69  LDQDNILLSRFIEACSSLGFSHY 91


>emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 35/83 (42%), Positives = 48/83 (57%)
 Frame = +1

Query: 136 LLKASLKTMFCTLSTVLRLSSYFSRRKLHTSADIYFLPLLNQCSNFKHINLAHGYMVPRG 315
           LL+ S   +F T +      SY            + L LL QCSN KH++  H +M+ RG
Sbjct: 21  LLQTSRAALFSTATAAAASPSY------------HLLSLLKQCSNLKHLHQTHCFMLSRG 68

Query: 316 LDQNNLLLSKFIDTCSVLGFTAY 384
           LDQ+N+LLS+FI+ CS LGF+ Y
Sbjct: 69  LDQDNILLSRFIEACSSLGFSHY 91


>ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
           gi|449493602|ref|XP_004159370.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/75 (40%), Positives = 47/75 (62%)
 Frame = +1

Query: 160 MFCTLSTVLRLSSYFSRRKLHTSADIYFLPLLNQCSNFKHINLAHGYMVPRGLDQNNLLL 339
           M  + S + + SS F +  + TS+ + F  LL+ C +  H+   HG+M+ R LDQ+NL L
Sbjct: 1   MCWSFSLLSKSSSSFFKPAIFTSS-LQFTSLLSNCRHHLHLYQIHGFMLHRALDQDNLFL 59

Query: 340 SKFIDTCSVLGFTAY 384
           S+FID C+ LG ++Y
Sbjct: 60  SQFIDACTSLGLSSY 74


>ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537334|gb|EEF38963.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 538

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 25/45 (55%), Positives = 32/45 (71%)
 Frame = +1

Query: 250 LLNQCSNFKHINLAHGYMVPRGLDQNNLLLSKFIDTCSVLGFTAY 384
           LLN CSN KH++  H +M+ R LD +NLLLS FI + S LGF+ Y
Sbjct: 17  LLNHCSNLKHLHQTHAFMLCRALDHDNLLLSLFIQSSSSLGFSLY 61