BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025969
         (1050 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]   152   4e-50
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   124   1e-33
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   119   3e-33
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   117   1e-32
ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm...    98   2e-29

>emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]
          Length = 1290

 Score =  152 bits (384), Expect(2) = 4e-50
 Identities = 98/266 (36%), Positives = 141/266 (53%), Gaps = 13/266 (4%)
 Frame = +2

Query: 260  QLSLPPQRTFPFQS---ESYIEPSHLRKIAVFKFVMSSSMPDSENDCIVMVICSQFNSLA 430
            Q+ LP  R  P  +   +S  + S  + I ++K V+SS+   S  DC VM+I S +  LA
Sbjct: 1033 QILLPSLRACPNLNTLIDSSTQGSRSKDIFIYKAVLSSA--PSSPDCAVMIIYSDYGRLA 1090

Query: 431  FARPGDETWTIIDSPPQQAHSDILFFNGRFYAIHAGGILRICEINEPVPKTIDFLPPP-- 604
            F +PG +TWT+++S       DI++FNG F A++    + IC+I+    KTI F   P  
Sbjct: 1091 FTKPGHQTWTLLESESGPV-DDIIYFNGSFLAVNLSWEVWICDISGSQLKTIRFAAAPAL 1149

Query: 605  ---DDIELSDRFYLVEISGHLHLVARGLDLDQNAPDTGR----YVTDW-FEVYKLDFDAK 760
               D+IE   + YLVE  G +++V R      N  DT R    Y+  W F V KLD   K
Sbjct: 1150 QDVDEIEYEAK-YLVESGGEIYMVTR------NLYDTARRDIPYMRTWTFSVLKLDMCNK 1202

Query: 761  KWIVLSDFGDYSIFIGTNSSFAISTSEYPGFKANYIYFTDDHEECYEYGGGHNMGFYDFD 940
            +W  + +    S F+G N SF+   S+YP F+ N IYFTDD+          +MG Y+F 
Sbjct: 1203 RWEEVENLDHCSFFLGNNHSFSTWASDYPEFRKNSIYFTDDYCGFLNIPRNFDMGIYNFQ 1262

Query: 941  NQKFGSFYVGEDIISFFCPPLFFRPS 1018
            N +   + VG D +S F  PL+ RPS
Sbjct: 1263 NTQIEHYPVGHDALSMFSAPLWIRPS 1288



 Score = 73.2 bits (178), Expect(2) = 4e-50
 Identities = 36/77 (46%), Positives = 48/77 (62%)
 Frame = +3

Query: 30   SYSPWLMLPERDENNSDGEQIHHNNRKFVCLSSGKTFNVYLPECQGSRCFGSPFGWLLTV 209
            S SPWLML E++ +   G         F    SGK + + LPE  G  C+GSP+GWL+T+
Sbjct: 967  SKSPWLMLAEKENSEIRG---------FYSPLSGKVYEIRLPEVVGKWCWGSPYGWLVTI 1017

Query: 210  GLDLNIHLLNPLTRAQL 260
            G DL++ LLNPLTR Q+
Sbjct: 1018 GTDLDMCLLNPLTRVQI 1034


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score =  124 bits (310), Expect(2) = 1e-33
 Identities = 81/251 (32%), Positives = 134/251 (53%), Gaps = 26/251 (10%)
 Frame = +2

Query: 257 AQLSLPPQRTFP-------------------FQSESYIEPSHLRKIAVFKFVMSSSMPDS 379
           A+LSLPP  +FP                         +    +R   + K V+SSS P  
Sbjct: 118 AKLSLPPLSSFPNVISFNYSDIGREYALRNLLGERVTVSLRQMRDSFIRKVVLSSS-PLK 176

Query: 380 ENDCIVMVICSQFNSLAFARPGDETWTIIDSPPQQAHSDILFFNGRFYAIHAGGILRICE 559
           +N+ +V+ I +Q + LA+ R GD++W+++++  +    D++F NG FYA++  G + IC+
Sbjct: 177 DNNFVVIAILNQTDDLAYCRNGDKSWSLVENA-RSFCEDVIFVNGMFYAVNKAGQIVICD 235

Query: 560 INEPVPKTIDFLPPPDDIELSDRFYLVEISGHLHLVARGLDLDQ--NAPDTGR---YVTD 724
           I+   P+ + F+  P      D  YLV     L LV R LDL+   + PD      Y T 
Sbjct: 236 ISSDSPR-VSFMETPRQAG-GDMQYLVNSGDELLLVTRYLDLEYEFDHPDMEPHLIYRTI 293

Query: 725 WFEVYKLDFDAKKWIVLSDFGDYSIFIGTNSSFAISTSEYPGFKANYIYFTDDHEECYEY 904
            FEV++LD++  +W+ +S  GD ++FIG NSS ++S +++ G   N IY+TDD+ +    
Sbjct: 294 RFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMGNCIYYTDDYLDANYD 353

Query: 905 G--GGHNMGFY 931
           G  G H++G +
Sbjct: 354 GHFGDHDLGIF 364



 Score = 46.6 bits (109), Expect(2) = 1e-33
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 39  PWLMLPERDENNSDGEQIHHNNRKFVCLSSGKTFNVYLPECQ-GSRCFGSPFGWLLTVGL 215
           PWLMLP+         Q + + R F  LS+ K   + LPE     R  GS  GWL+ +  
Sbjct: 52  PWLMLPQSQS------QSNQSRRAFFSLSTNKFHFLNLPEVSYRKRHCGSSHGWLMILDD 105

Query: 216 DLNIHLLNPLTRAQLN 263
              I L+NPLTRA+L+
Sbjct: 106 TPTILLINPLTRAKLS 121


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  119 bits (297), Expect(2) = 3e-33
 Identities = 73/211 (34%), Positives = 120/211 (56%), Gaps = 5/211 (2%)
 Frame = +2

Query: 326 LRKIAVFKFVMSSSMPDSENDCIVMVICSQFNSLAFARPGDETWTIIDSPPQQAHSDILF 505
           +R   + K ++SSS P + +D I +VI +Q   LA  R  D++WT ++     A  D++F
Sbjct: 157 MRDSFIKKTILSSS-PANGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQSYAE-DVIF 214

Query: 506 FNGRFYAIHAGGILRICEINEPVPKTIDFLPPPDDIELSDRFYLVEISGHLHLVARGLDL 685
             G FYA++  G + +C+++   P+ +  +  P      D  YLVE    L LV R LDL
Sbjct: 215 HRGLFYAVNKYGSIAVCDVSGSSPR-VSIIEMPQQFG-GDLQYLVESGEELLLVTRYLDL 272

Query: 686 DQNA-PDTGR--YVTDWFEVYKLDFDAKKWIVLSDFGDYSIFIGTNSSFAISTSEYPGFK 856
             +  PD     Y T  F+V +LD  A +W V+S  GD ++F+G N S ++S+ ++PG K
Sbjct: 273 TYDVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCK 332

Query: 857 ANYIYFTDDH-EECYE-YGGGHNMGFYDFDN 943
            N IY+TDD+ E+ Y+  GG  ++G ++ ++
Sbjct: 333 GNCIYYTDDYSEDNYDGIGGEQDLGIFNLED 363



 Score = 50.4 bits (119), Expect(2) = 3e-33
 Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 39  PWLMLPERDENNSDGEQIHHNNRKFVCLSSGKTFNVYLPECQGSRCF-GSPFGWLLTVGL 215
           PWLMLP+         Q HH +R F  LS  K   + LPE    R   GS  GWLL +  
Sbjct: 51  PWLMLPQ--------SQPHHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDE 102

Query: 216 DLNIHLLNPLTRAQLN 263
              I LLNPLTR++++
Sbjct: 103 APEIFLLNPLTRSKVH 118


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  117 bits (292), Expect(2) = 1e-32
 Identities = 73/211 (34%), Positives = 119/211 (56%), Gaps = 5/211 (2%)
 Frame = +2

Query: 326 LRKIAVFKFVMSSSMPDSENDCIVMVICSQFNSLAFARPGDETWTIIDSPPQQAHSDILF 505
           +R   + K ++SSS P + +D I +VI +Q   LA  R  D++WT ++   Q    D++F
Sbjct: 157 MRDSFIKKTILSSS-PANGSDFIAVVILNQTGDLALCRKSDDSWTFLEDA-QSYSEDVIF 214

Query: 506 FNGRFYAIHAGGILRICEINEPVPKTIDFLPPPDDIELSDRFYLVEISGHLHLVARGLDL 685
             G FYA++  G + +C+++   P+ +  +  P      D  YLVE    L LV R LDL
Sbjct: 215 HRGLFYAVNKYGSIAVCDVSGSSPR-VSIIEMPQQFG-GDLQYLVESGEELLLVTRYLDL 272

Query: 686 --DQNAPDTGR-YVTDWFEVYKLDFDAKKWIVLSDFGDYSIFIGTNSSFAISTSEYPGFK 856
             D     T   Y T  F+V +LD  A +W V+S  GD ++F+G N S ++S+ ++PG K
Sbjct: 273 TYDVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCK 332

Query: 857 ANYIYFTDDH-EECYE-YGGGHNMGFYDFDN 943
            N IY+TDD+ E+ Y+  GG  ++G ++ ++
Sbjct: 333 GNCIYYTDDYSEDNYDGIGGEQDLGIFNLED 363



 Score = 50.4 bits (119), Expect(2) = 1e-32
 Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 39  PWLMLPERDENNSDGEQIHHNNRKFVCLSSGKTFNVYLPECQGSRCF-GSPFGWLLTVGL 215
           PWLMLP+         Q HH +R F  LS  K   + LPE    R   GS  GWLL +  
Sbjct: 51  PWLMLPQ--------SQPHHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDE 102

Query: 216 DLNIHLLNPLTRAQLN 263
              I LLNPLTR++++
Sbjct: 103 APEIFLLNPLTRSKVH 118


>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
           gi|223551309|gb|EEF52795.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 406

 Score = 97.8 bits (242), Expect(2) = 2e-29
 Identities = 78/255 (30%), Positives = 114/255 (44%), Gaps = 25/255 (9%)
 Frame = +2

Query: 257 AQLSLPPQRTFP-FQSESYIEPSH-------------LRKIAVFKFVMSSSMPDSENDCI 394
           A++ LP   TFP F +E   E S              +R+  + K ++S     S  +  
Sbjct: 114 ARIELPSLSTFPYFPTEVVYENSRNINEYFNTKAKLRIRETYIRKAIVSED--PSTGNFA 171

Query: 395 VMVICSQFNS---LAFARPGDETWTIIDSPPQQAH-SDILFFNGRFYAIHAGGILRIC-- 556
           VM I    NS   +AF + GD TW  I    Q+ H  D++F  G+FYA+   G + IC  
Sbjct: 172 VMAIYKTINSTENIAFCKSGDATWFTIQETSQKIHYQDVMFHRGKFYAVDDKGRVSICIT 231

Query: 557 EINEPVPKTIDFLPPPDDIELSDRFYLVEISGHLHLVARGLDLDQNAPDTGRYVTDWFEV 736
           +IN P    +   PP   +    ++YL  +   L L  R      +  +   Y T  F V
Sbjct: 232 DINPPSVIQVADPPPVPPLMGYKQWYLASLDEDLILAGRFRKYRGSGYE---YQTHKFMV 288

Query: 737 YKLDFDAKKWIVLSDFGDYSIFIGTNSSFAISTSEYPGFKANYIYFTDDHEECYEYGG-- 910
           YKLD  +  W+ L   GD   F+G N   +IST  Y  +  N IYFTDD    +  G   
Sbjct: 289 YKLDASSSNWLELDGLGDMLSFLGWNCFHSISTQNYRNYSGNCIYFTDDK---FIVGSDF 345

Query: 911 ---GHNMGFYDFDNQ 946
              GH+ G ++ D++
Sbjct: 346 PWEGHDYGIFNLDDK 360



 Score = 58.9 bits (141), Expect(2) = 2e-29
 Identities = 32/74 (43%), Positives = 43/74 (58%)
 Frame = +3

Query: 39  PWLMLPERDENNSDGEQIHHNNRKFVCLSSGKTFNVYLPECQGSRCFGSPFGWLLTVGLD 218
           PWL+LP    N         N+R F  L+ GKT+++ LPE    RC GS  GWL+ V   
Sbjct: 51  PWLLLPYHKNNP--------NHRGFYNLADGKTYHLELPETIEKRCCGSSHGWLVMVEDT 102

Query: 219 LNIHLLNPLTRAQL 260
            +I LLNPLT+A++
Sbjct: 103 PSIFLLNPLTKARI 116