BLASTX nr result

ID: Coptis25_contig00025955 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025955
         (1606 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containi...   343   7e-92
ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containi...   341   4e-91
ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containi...   336   9e-90
emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]   335   3e-89
ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|2...   312   2e-82

>ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
            mitochondrial-like [Glycine max]
          Length = 629

 Score =  343 bits (880), Expect = 7e-92
 Identities = 206/537 (38%), Positives = 306/537 (56%), Gaps = 2/537 (0%)
 Frame = +1

Query: 1    SNKFIISPRRSCNYFSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTP 180
            ++ F ++P  S   FS+E VL Q  + DH+L  +  I SK   +++ KT L SN V +T 
Sbjct: 38   NSTFPLNP--SFRRFSSEPVLAQ-ADTDHLL--VADIFSKPVDSEDFKTLLGSNRVSITH 92

Query: 181  KLVFSTLNSLQGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLL 360
              V + L     +V+ AR+FF +V E   ER+ +  CY SML +LGT+G  +V EFW L+
Sbjct: 93   DAVLAVLGKFDSNVDAARRFFQWVSENHPERLSS-KCYNSMLCVLGTNG--FVDEFWDLV 149

Query: 361  QVMXXXXXXXXXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVIN 540
             VM             ++V +SF+             ++ NS+ +N      + +  ++ 
Sbjct: 150  NVMKKKGYGVSKGVK-ERVLESFEKGGMDGDVAKLKGLFDNSKEKN-----IAIVCRIVR 203

Query: 541  EKDWFDFPSDVQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFL 720
               W D   DV+++I D+N  +S E++K V+E +V  P K L+FF W + +  FK D   
Sbjct: 204  NNVWGD---DVEKQIEDLNVGFSSEVVKTVLESLVLEPVKALIFFRWLEESGLFKHDGRT 260

Query: 721  YDAVVKVLAHSHNFRYIGCMPFWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVEL 900
            Y+A+ +VL             FW++V +M++ G EME ET+  V+  FCK+++++DAVEL
Sbjct: 261  YNAMARVLGREDLIDR-----FWKLVGDMRSAGFEMEAETFVKVLGRFCKRRMVKDAVEL 315

Query: 901  YEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKS 1080
            YE+ M  A KP VQ  V L R V   G+ LD  LFS+V++ FT  G  LT S+ + V+KS
Sbjct: 316  YEFAMAGANKPTVQCCVFLLRKVAA-GKELDTDLFSRVLKVFTGNGNVLTDSVANAVLKS 374

Query: 1081 LISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVGG--EAVLMMSEMKASGHIPD 1254
            L SV +  E +K+LK ME  G +    L +KI Y L   G   +A   M+ ++ SG  P 
Sbjct: 375  LTSVGRTGEWNKVLKEMEDCGFVAGGSLQSKIAYRLGAAGNKEQAHEFMNRIEVSGSNPY 434

Query: 1255 SKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFL 1434
             KTW SLI G C+AG++ KA  S + +V+  G+  AG +F  ++N +CQ  +  +A K L
Sbjct: 435  RKTWESLIQGYCVAGNLDKAFESFKEIVEKEGVASAGYSFNVLMNSYCQMNRAVDASKIL 494

Query: 1435 FKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
             + V E   KP HSTYK+L+ KLL +G F +AL +LGLM  HGF PF DPFI+H+SK
Sbjct: 495  CRLVNEKQLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTHGFPPFTDPFIEHLSK 551


>ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
            mitochondrial-like [Glycine max]
          Length = 628

 Score =  341 bits (874), Expect = 4e-91
 Identities = 208/537 (38%), Positives = 306/537 (56%), Gaps = 2/537 (0%)
 Frame = +1

Query: 1    SNKFIISPRRSCNYFSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTP 180
            ++ F ++P  S  +FS+E VL Q  + D++L V   I SK   +++ KT L SN V +T 
Sbjct: 38   NSTFQLNP--SFRHFSSEPVLAQ-ADTDNLLVV--DIFSKPADSEDFKTLLDSNRVMITH 92

Query: 181  KLVFSTLNSLQGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLL 360
              V + L  L  +VE AR+FF +V E   ER+ +  CY SML +LGT+G   VHEFW L+
Sbjct: 93   DAVLAVLWKLDSNVEAARRFFLWVSENHPERLSS-KCYNSMLRVLGTNG--VVHEFWDLV 149

Query: 361  QVMXXXXXXXXXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVIN 540
             VM             + V +SF+             +Y N   +N      + +  ++ 
Sbjct: 150  DVMKKKGYGVSKGVK-EIVLESFEKGGMVADVAKLKGLYDNLNEKN-----IAIVCRIVR 203

Query: 541  EKDWFDFPSDVQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFL 720
               W D   DV+++I D+N  +S +++KMV+E +   P K L+FF W + +  FK D   
Sbjct: 204  NNVWDD---DVERQIKDLNVGFSGDVVKMVLESLASEPAKALIFFRWLEESGMFKQDGAT 260

Query: 721  YDAVVKVLAHSHNFRYIGCMPFWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVEL 900
            Y+A+ +VL    +        FW++V +M+  G EME ET+  V+  FCK+++++DAVEL
Sbjct: 261  YNAMARVLGREDSIDR-----FWKLVGDMRNAGFEMEFETFVKVLGRFCKRRMVKDAVEL 315

Query: 901  YEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKS 1080
            YE+ M    KP VQ  V L R V   G+ LDM LF +V++ FT  G  LT S+ D V+K+
Sbjct: 316  YEFAMTGVNKPTVQCCVFLLRKVAA-GKELDMDLFLRVLKVFTGSGNLLTDSMADAVLKT 374

Query: 1081 LISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVGG--EAVLMMSEMKASGHIPD 1254
            L SV +  E +K+LK ME  GC   + L +KI Y L   G   +A   M+ ++AS   PD
Sbjct: 375  LTSVGRTGEWNKVLKEMEIVGCCRCN-LQSKIAYRLGAAGNKEQAHEFMNRIEASRSSPD 433

Query: 1255 SKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFL 1434
             KTW SLI G C+AG++ KA  S + +V+  G+  AG +F+ ++N +CQ  +  +A K L
Sbjct: 434  RKTWDSLIEGHCVAGNLDKAFESFKEIVEKEGVASAGYSFDVLMNSYCQMNRAVDASKIL 493

Query: 1435 FKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
             + V E   KP HSTYK+L+ KLL +G F +AL +LGLM   GF PF DPFI+H+SK
Sbjct: 494  CRLVNEKKLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTLGFPPFTDPFIEHLSK 550


>ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
            mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  336 bits (862), Expect = 9e-90
 Identities = 202/524 (38%), Positives = 314/524 (59%), Gaps = 3/524 (0%)
 Frame = +1

Query: 43   FSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFSTLNSLQGDV 222
            FS++  LE +K  DHV  V T I SK    DEIK  ++S+ + V+ +LV   L +L+ + 
Sbjct: 70   FSSDLALE-DKGLDHV--VFTDIFSKPKGFDEIKNEVESSDIVVSHELVLKVLENLESNP 126

Query: 223  ETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXXXXXXXXXX 402
            E AR  F +V   E+ER+ +   Y  MLGILG++G  +V EFW L++VM           
Sbjct: 127  EVARSVFDWVLRAESERLSS-KSYNLMLGILGSNG--FVSEFWDLVEVMKKKGYGVSKAA 183

Query: 403  XYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDWFDFPSDVQQK 582
             Y K  ++F+             ++++   ++S++++ SR+S +I  + W D   +V+ +
Sbjct: 184  -YVKALENFEKEALGSDLEKLRGLFASGSVDDSIQKICSRVSKIIRSEVWGD---NVEGQ 239

Query: 583  ILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVKVLAHSHNF 762
            + ++   +S +L+ MV+E +   P K L+FF W + +   K D   Y+A+++VL      
Sbjct: 240  LHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLVKHDKQTYNAMLRVLGRED-- 297

Query: 763  RYIGCMP-FWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVELYEYKMGSATKPPV 939
                C+  FW++  EM+  G+EME+ TY  V+  F K+++I++ V+LYE+ M  A KP +
Sbjct: 298  ----CIERFWKVADEMRNAGYEMEVATYFKVVGRFYKRKMIKEVVDLYEFAMSGANKPSM 353

Query: 940  QDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKSLISVEKVKECDKI 1119
             D   L R +V   + LD+ LFS+VV T+TEGG  LT S+LD ++KSL SV +  EC+K+
Sbjct: 354  YDCTFLLRKIVV-SKVLDISLFSRVVRTYTEGGNILTKSMLDAILKSLTSVGRFGECNKL 412

Query: 1120 LKAMEKGGCIPSSELYNKIIYHLATVG--GEAVLMMSEMKASGHIPDSKTWTSLIFGQCI 1293
            LKAME+GG +  S + NKI + L++     EA   M+ M+ S   P+ +TW+SLI G C+
Sbjct: 413  LKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYRTWSSLIEGYCV 472

Query: 1294 AGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFLFKTVREHHFKPQH 1473
            AGD+ KAS+  + MV+  G++ AG AFE +VN +C + ++ +A   L     +  FKP H
Sbjct: 473  AGDLDKASDCFQKMVEKEGVSYAGYAFEVLVNAYCCKGRSVDACGLLCDLASKEKFKPWH 532

Query: 1474 STYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
            STYK+LI KLL +G F  AL LLGLM  H F PFLDPFI+++S+
Sbjct: 533  STYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSR 576


>emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]
          Length = 650

 Score =  335 bits (858), Expect = 3e-89
 Identities = 202/524 (38%), Positives = 311/524 (59%), Gaps = 3/524 (0%)
 Frame = +1

Query: 43   FSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFSTLNSLQGDV 222
            FS++  LE +K  DHV  V T I SK    DEIK  ++S+ + V+ +LV   L +L+ + 
Sbjct: 70   FSSDLALE-DKGLDHV--VFTDIFSKPKGFDEIKNEVESSDIVVSHELVLKVLENLESNP 126

Query: 223  ETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXXXXXXXXXX 402
            E AR  F +V   E+ER+ +   Y  MLGILG++G  +V EFW L++VM           
Sbjct: 127  EVARXVFDWVLRAESERLSS-KSYNLMLGILGSNG--FVSEFWDLVEVMKKKGYGVSKAA 183

Query: 403  XYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDWFDFPSDVQQK 582
             Y K  ++F+             ++++   +NS++++ SR+S +I  + W D   +V+ +
Sbjct: 184  -YVKALENFEKEALGSDLEKLRGLFASGSVDNSIQKICSRVSKIIRSEVWGD---NVEGQ 239

Query: 583  ILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVKVLAHSHNF 762
            + ++   +S +L+ MV+E +   P K L+FF W + +   K D   Y+A+++VL      
Sbjct: 240  LHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLXKHDKXTYNAMLRVLGRED-- 297

Query: 763  RYIGCMP-FWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVELYEYKMGSATKPPV 939
                C+  FW++  EM+  G+EME+ TY  V+  F K+++I + V+LYE+ M  A KP +
Sbjct: 298  ----CIERFWKVADEMRNAGYEMEVATYXKVVGRFYKRKMIXEVVDLYEFAMSGANKPSM 353

Query: 940  QDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKSLISVEKVKECDKI 1119
             D   L R +V   + LD+ LFS+VV T+TEGG  LT S+LD  +KSL SV +  EC+K+
Sbjct: 354  YDCTFLLRKIVV-SKVLDISLFSRVVRTYTEGGNILTKSMLDAXLKSLTSVGRFGECNKL 412

Query: 1120 LKAMEKGGCIPSSELYNKIIYHLATVG--GEAVLMMSEMKASGHIPDSKTWTSLIFGQCI 1293
            LKAME+GG +  S + NKI + L++     EA   M+ M+ S   P+ +TW+SLI G C+
Sbjct: 413  LKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYRTWSSLIEGYCV 472

Query: 1294 AGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFLFKTVREHHFKPQH 1473
            AGD+ KAS+  + MV+  G++  G AFE +VN +C + ++ +A   L     +  FKP H
Sbjct: 473  AGDLDKASDCFQKMVEKEGVSYXGYAFEVLVNAYCCKGRSVDACGLLCDLASKEKFKPWH 532

Query: 1474 STYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
            STYK+LI KLL +G F  AL LLGLM  H F PFLDPFI+++S+
Sbjct: 533  STYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSR 576


>ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|222870762|gb|EEF07893.1|
            predicted protein [Populus trichocarpa]
          Length = 658

 Score =  312 bits (799), Expect = 2e-82
 Identities = 189/532 (35%), Positives = 303/532 (56%), Gaps = 3/532 (0%)
 Frame = +1

Query: 19   SPRRSCNYFSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFST 198
            +P  + N  S  S++E  K+ D VL V   + +K   +D+I   L+ + V ++  LV   
Sbjct: 64   NPLFARNLSSEASLVEPTKDPDLVLLVCD-VFTKFDDSDDINKELELSSVVISHDLVLKV 122

Query: 199  LNSLQGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXX 378
            L SL      A++FF +V + ++ER+ +   Y  MLGILG +G   V EFW L+  M   
Sbjct: 123  LKSLGSKPGVAKRFFDWVLKKDSERLSS-KSYNWMLGILGVNG--LVAEFWELVDKMKTK 179

Query: 379  XXXXXXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDWFD 558
                      D+V + F+             +++    +NS++++  R+S ++  K W +
Sbjct: 180  GYGVSGVTR-DRVLEKFENEGLKGDIEKLKGVFATGSIDNSVEKIGLRMSRIVRSKFWGE 238

Query: 559  FPSDVQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVK 738
               DV+ +I  ++  +S  L+K+V+E +   P K L+FF W + +   K D   Y+A+ +
Sbjct: 239  ---DVEGEIKGLSAEFSSGLVKIVLEHLAIEPMKALIFFRWVEESELCKHDGGSYNAMAR 295

Query: 739  VLAHSHNFRYIGCMP-FWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVELYEYKM 915
            VL          C+  FW+++ EM++ G EME+ET+  V+  F ++++I++AV+LYE+ M
Sbjct: 296  VLGSKD------CIDRFWKVIDEMRSNGFEMEVETFDTVLAWFMRRKMIKEAVDLYEFAM 349

Query: 916  GSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKSLISVE 1095
              A KP  +    L RN+V   + LD+ LFS++V+ FTE G  LT S+LD V+K+L SV 
Sbjct: 350  NGANKPSSKYCTYLLRNIVVC-KQLDIGLFSRIVKVFTENGNVLTDSMLDAVLKALRSVG 408

Query: 1096 KVKECDKILKAMEKGGCIPSSELYNKIIYHLATVGG--EAVLMMSEMKASGHIPDSKTWT 1269
            + KEC+KIL+ M   G + S  L  KI + L + G   EA+  +  M++SG   D+K W 
Sbjct: 409  RFKECNKILREMMVAGFVASGNLQRKIAFGLTSAGKNYEAIEFVDHMESSGSDLDNKAWA 468

Query: 1270 SLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFLFKTVR 1449
            SLI G C++GD++KAS+  + MV+  G+T AG A E +VN +C + +  +A   L   V 
Sbjct: 469  SLIEGHCVSGDLEKASDCFKKMVEKKGVTGAGYAVELLVNAYCLKNRAGDACNLLCDYVC 528

Query: 1450 EHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
            ++   P  +TYK+LI KLLA+G F +AL LLGLM  HG  P++DPF + +SK
Sbjct: 529  QNQLHPWRTTYKVLISKLLAQGGFKDALNLLGLMQSHGIPPYIDPFFEFVSK 580


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