BLASTX nr result
ID: Coptis25_contig00025955
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00025955
(1606 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containi... 343 7e-92
ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containi... 341 4e-91
ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containi... 336 9e-90
emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera] 335 3e-89
ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|2... 312 2e-82
>ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Glycine max]
Length = 629
Score = 343 bits (880), Expect = 7e-92
Identities = 206/537 (38%), Positives = 306/537 (56%), Gaps = 2/537 (0%)
Frame = +1
Query: 1 SNKFIISPRRSCNYFSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTP 180
++ F ++P S FS+E VL Q + DH+L + I SK +++ KT L SN V +T
Sbjct: 38 NSTFPLNP--SFRRFSSEPVLAQ-ADTDHLL--VADIFSKPVDSEDFKTLLGSNRVSITH 92
Query: 181 KLVFSTLNSLQGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLL 360
V + L +V+ AR+FF +V E ER+ + CY SML +LGT+G +V EFW L+
Sbjct: 93 DAVLAVLGKFDSNVDAARRFFQWVSENHPERLSS-KCYNSMLCVLGTNG--FVDEFWDLV 149
Query: 361 QVMXXXXXXXXXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVIN 540
VM ++V +SF+ ++ NS+ +N + + ++
Sbjct: 150 NVMKKKGYGVSKGVK-ERVLESFEKGGMDGDVAKLKGLFDNSKEKN-----IAIVCRIVR 203
Query: 541 EKDWFDFPSDVQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFL 720
W D DV+++I D+N +S E++K V+E +V P K L+FF W + + FK D
Sbjct: 204 NNVWGD---DVEKQIEDLNVGFSSEVVKTVLESLVLEPVKALIFFRWLEESGLFKHDGRT 260
Query: 721 YDAVVKVLAHSHNFRYIGCMPFWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVEL 900
Y+A+ +VL FW++V +M++ G EME ET+ V+ FCK+++++DAVEL
Sbjct: 261 YNAMARVLGREDLIDR-----FWKLVGDMRSAGFEMEAETFVKVLGRFCKRRMVKDAVEL 315
Query: 901 YEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKS 1080
YE+ M A KP VQ V L R V G+ LD LFS+V++ FT G LT S+ + V+KS
Sbjct: 316 YEFAMAGANKPTVQCCVFLLRKVAA-GKELDTDLFSRVLKVFTGNGNVLTDSVANAVLKS 374
Query: 1081 LISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVGG--EAVLMMSEMKASGHIPD 1254
L SV + E +K+LK ME G + L +KI Y L G +A M+ ++ SG P
Sbjct: 375 LTSVGRTGEWNKVLKEMEDCGFVAGGSLQSKIAYRLGAAGNKEQAHEFMNRIEVSGSNPY 434
Query: 1255 SKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFL 1434
KTW SLI G C+AG++ KA S + +V+ G+ AG +F ++N +CQ + +A K L
Sbjct: 435 RKTWESLIQGYCVAGNLDKAFESFKEIVEKEGVASAGYSFNVLMNSYCQMNRAVDASKIL 494
Query: 1435 FKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
+ V E KP HSTYK+L+ KLL +G F +AL +LGLM HGF PF DPFI+H+SK
Sbjct: 495 CRLVNEKQLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTHGFPPFTDPFIEHLSK 551
>ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Glycine max]
Length = 628
Score = 341 bits (874), Expect = 4e-91
Identities = 208/537 (38%), Positives = 306/537 (56%), Gaps = 2/537 (0%)
Frame = +1
Query: 1 SNKFIISPRRSCNYFSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTP 180
++ F ++P S +FS+E VL Q + D++L V I SK +++ KT L SN V +T
Sbjct: 38 NSTFQLNP--SFRHFSSEPVLAQ-ADTDNLLVV--DIFSKPADSEDFKTLLDSNRVMITH 92
Query: 181 KLVFSTLNSLQGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLL 360
V + L L +VE AR+FF +V E ER+ + CY SML +LGT+G VHEFW L+
Sbjct: 93 DAVLAVLWKLDSNVEAARRFFLWVSENHPERLSS-KCYNSMLRVLGTNG--VVHEFWDLV 149
Query: 361 QVMXXXXXXXXXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVIN 540
VM + V +SF+ +Y N +N + + ++
Sbjct: 150 DVMKKKGYGVSKGVK-EIVLESFEKGGMVADVAKLKGLYDNLNEKN-----IAIVCRIVR 203
Query: 541 EKDWFDFPSDVQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFL 720
W D DV+++I D+N +S +++KMV+E + P K L+FF W + + FK D
Sbjct: 204 NNVWDD---DVERQIKDLNVGFSGDVVKMVLESLASEPAKALIFFRWLEESGMFKQDGAT 260
Query: 721 YDAVVKVLAHSHNFRYIGCMPFWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVEL 900
Y+A+ +VL + FW++V +M+ G EME ET+ V+ FCK+++++DAVEL
Sbjct: 261 YNAMARVLGREDSIDR-----FWKLVGDMRNAGFEMEFETFVKVLGRFCKRRMVKDAVEL 315
Query: 901 YEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKS 1080
YE+ M KP VQ V L R V G+ LDM LF +V++ FT G LT S+ D V+K+
Sbjct: 316 YEFAMTGVNKPTVQCCVFLLRKVAA-GKELDMDLFLRVLKVFTGSGNLLTDSMADAVLKT 374
Query: 1081 LISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVGG--EAVLMMSEMKASGHIPD 1254
L SV + E +K+LK ME GC + L +KI Y L G +A M+ ++AS PD
Sbjct: 375 LTSVGRTGEWNKVLKEMEIVGCCRCN-LQSKIAYRLGAAGNKEQAHEFMNRIEASRSSPD 433
Query: 1255 SKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFL 1434
KTW SLI G C+AG++ KA S + +V+ G+ AG +F+ ++N +CQ + +A K L
Sbjct: 434 RKTWDSLIEGHCVAGNLDKAFESFKEIVEKEGVASAGYSFDVLMNSYCQMNRAVDASKIL 493
Query: 1435 FKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
+ V E KP HSTYK+L+ KLL +G F +AL +LGLM GF PF DPFI+H+SK
Sbjct: 494 CRLVNEKKLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTLGFPPFTDPFIEHLSK 550
>ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 336 bits (862), Expect = 9e-90
Identities = 202/524 (38%), Positives = 314/524 (59%), Gaps = 3/524 (0%)
Frame = +1
Query: 43 FSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFSTLNSLQGDV 222
FS++ LE +K DHV V T I SK DEIK ++S+ + V+ +LV L +L+ +
Sbjct: 70 FSSDLALE-DKGLDHV--VFTDIFSKPKGFDEIKNEVESSDIVVSHELVLKVLENLESNP 126
Query: 223 ETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXXXXXXXXXX 402
E AR F +V E+ER+ + Y MLGILG++G +V EFW L++VM
Sbjct: 127 EVARSVFDWVLRAESERLSS-KSYNLMLGILGSNG--FVSEFWDLVEVMKKKGYGVSKAA 183
Query: 403 XYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDWFDFPSDVQQK 582
Y K ++F+ ++++ ++S++++ SR+S +I + W D +V+ +
Sbjct: 184 -YVKALENFEKEALGSDLEKLRGLFASGSVDDSIQKICSRVSKIIRSEVWGD---NVEGQ 239
Query: 583 ILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVKVLAHSHNF 762
+ ++ +S +L+ MV+E + P K L+FF W + + K D Y+A+++VL
Sbjct: 240 LHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLVKHDKQTYNAMLRVLGRED-- 297
Query: 763 RYIGCMP-FWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVELYEYKMGSATKPPV 939
C+ FW++ EM+ G+EME+ TY V+ F K+++I++ V+LYE+ M A KP +
Sbjct: 298 ----CIERFWKVADEMRNAGYEMEVATYFKVVGRFYKRKMIKEVVDLYEFAMSGANKPSM 353
Query: 940 QDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKSLISVEKVKECDKI 1119
D L R +V + LD+ LFS+VV T+TEGG LT S+LD ++KSL SV + EC+K+
Sbjct: 354 YDCTFLLRKIVV-SKVLDISLFSRVVRTYTEGGNILTKSMLDAILKSLTSVGRFGECNKL 412
Query: 1120 LKAMEKGGCIPSSELYNKIIYHLATVG--GEAVLMMSEMKASGHIPDSKTWTSLIFGQCI 1293
LKAME+GG + S + NKI + L++ EA M+ M+ S P+ +TW+SLI G C+
Sbjct: 413 LKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYRTWSSLIEGYCV 472
Query: 1294 AGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFLFKTVREHHFKPQH 1473
AGD+ KAS+ + MV+ G++ AG AFE +VN +C + ++ +A L + FKP H
Sbjct: 473 AGDLDKASDCFQKMVEKEGVSYAGYAFEVLVNAYCCKGRSVDACGLLCDLASKEKFKPWH 532
Query: 1474 STYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
STYK+LI KLL +G F AL LLGLM H F PFLDPFI+++S+
Sbjct: 533 STYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSR 576
>emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]
Length = 650
Score = 335 bits (858), Expect = 3e-89
Identities = 202/524 (38%), Positives = 311/524 (59%), Gaps = 3/524 (0%)
Frame = +1
Query: 43 FSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFSTLNSLQGDV 222
FS++ LE +K DHV V T I SK DEIK ++S+ + V+ +LV L +L+ +
Sbjct: 70 FSSDLALE-DKGLDHV--VFTDIFSKPKGFDEIKNEVESSDIVVSHELVLKVLENLESNP 126
Query: 223 ETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXXXXXXXXXX 402
E AR F +V E+ER+ + Y MLGILG++G +V EFW L++VM
Sbjct: 127 EVARXVFDWVLRAESERLSS-KSYNLMLGILGSNG--FVSEFWDLVEVMKKKGYGVSKAA 183
Query: 403 XYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDWFDFPSDVQQK 582
Y K ++F+ ++++ +NS++++ SR+S +I + W D +V+ +
Sbjct: 184 -YVKALENFEKEALGSDLEKLRGLFASGSVDNSIQKICSRVSKIIRSEVWGD---NVEGQ 239
Query: 583 ILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVKVLAHSHNF 762
+ ++ +S +L+ MV+E + P K L+FF W + + K D Y+A+++VL
Sbjct: 240 LHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLXKHDKXTYNAMLRVLGRED-- 297
Query: 763 RYIGCMP-FWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVELYEYKMGSATKPPV 939
C+ FW++ EM+ G+EME+ TY V+ F K+++I + V+LYE+ M A KP +
Sbjct: 298 ----CIERFWKVADEMRNAGYEMEVATYXKVVGRFYKRKMIXEVVDLYEFAMSGANKPSM 353
Query: 940 QDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKSLISVEKVKECDKI 1119
D L R +V + LD+ LFS+VV T+TEGG LT S+LD +KSL SV + EC+K+
Sbjct: 354 YDCTFLLRKIVV-SKVLDISLFSRVVRTYTEGGNILTKSMLDAXLKSLTSVGRFGECNKL 412
Query: 1120 LKAMEKGGCIPSSELYNKIIYHLATVG--GEAVLMMSEMKASGHIPDSKTWTSLIFGQCI 1293
LKAME+GG + S + NKI + L++ EA M+ M+ S P+ +TW+SLI G C+
Sbjct: 413 LKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYRTWSSLIEGYCV 472
Query: 1294 AGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFLFKTVREHHFKPQH 1473
AGD+ KAS+ + MV+ G++ G AFE +VN +C + ++ +A L + FKP H
Sbjct: 473 AGDLDKASDCFQKMVEKEGVSYXGYAFEVLVNAYCCKGRSVDACGLLCDLASKEKFKPWH 532
Query: 1474 STYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
STYK+LI KLL +G F AL LLGLM H F PFLDPFI+++S+
Sbjct: 533 STYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSR 576
>ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|222870762|gb|EEF07893.1|
predicted protein [Populus trichocarpa]
Length = 658
Score = 312 bits (799), Expect = 2e-82
Identities = 189/532 (35%), Positives = 303/532 (56%), Gaps = 3/532 (0%)
Frame = +1
Query: 19 SPRRSCNYFSTESVLEQNKEDDHVLAVLTHILSKSTSNDEIKTALKSNHVFVTPKLVFST 198
+P + N S S++E K+ D VL V + +K +D+I L+ + V ++ LV
Sbjct: 64 NPLFARNLSSEASLVEPTKDPDLVLLVCD-VFTKFDDSDDINKELELSSVVISHDLVLKV 122
Query: 199 LNSLQGDVETARKFFHFVDETENERMFTFNCYYSMLGILGTSGKEYVHEFWRLLQVMXXX 378
L SL A++FF +V + ++ER+ + Y MLGILG +G V EFW L+ M
Sbjct: 123 LKSLGSKPGVAKRFFDWVLKKDSERLSS-KSYNWMLGILGVNG--LVAEFWELVDKMKTK 179
Query: 379 XXXXXXXXXYDKVADSFQXXXXXXXXXXXXXMYSNSQAENSMKQVASRISNVINEKDWFD 558
D+V + F+ +++ +NS++++ R+S ++ K W +
Sbjct: 180 GYGVSGVTR-DRVLEKFENEGLKGDIEKLKGVFATGSIDNSVEKIGLRMSRIVRSKFWGE 238
Query: 559 FPSDVQQKILDINCIWSPELIKMVVEKVVGNPRKILLFFWWFQVTFSFKPDYFLYDAVVK 738
DV+ +I ++ +S L+K+V+E + P K L+FF W + + K D Y+A+ +
Sbjct: 239 ---DVEGEIKGLSAEFSSGLVKIVLEHLAIEPMKALIFFRWVEESELCKHDGGSYNAMAR 295
Query: 739 VLAHSHNFRYIGCMP-FWRIVVEMKACGHEMEMETYSFVMLLFCKKQLIEDAVELYEYKM 915
VL C+ FW+++ EM++ G EME+ET+ V+ F ++++I++AV+LYE+ M
Sbjct: 296 VLGSKD------CIDRFWKVIDEMRSNGFEMEVETFDTVLAWFMRRKMIKEAVDLYEFAM 349
Query: 916 GSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVKSLISVE 1095
A KP + L RN+V + LD+ LFS++V+ FTE G LT S+LD V+K+L SV
Sbjct: 350 NGANKPSSKYCTYLLRNIVVC-KQLDIGLFSRIVKVFTENGNVLTDSMLDAVLKALRSVG 408
Query: 1096 KVKECDKILKAMEKGGCIPSSELYNKIIYHLATVGG--EAVLMMSEMKASGHIPDSKTWT 1269
+ KEC+KIL+ M G + S L KI + L + G EA+ + M++SG D+K W
Sbjct: 409 RFKECNKILREMMVAGFVASGNLQRKIAFGLTSAGKNYEAIEFVDHMESSGSDLDNKAWA 468
Query: 1270 SLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKFLFKTVR 1449
SLI G C++GD++KAS+ + MV+ G+T AG A E +VN +C + + +A L V
Sbjct: 469 SLIEGHCVSGDLEKASDCFKKMVEKKGVTGAGYAVELLVNAYCLKNRAGDACNLLCDYVC 528
Query: 1450 EHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISK 1605
++ P +TYK+LI KLLA+G F +AL LLGLM HG P++DPF + +SK
Sbjct: 529 QNQLHPWRTTYKVLISKLLAQGGFKDALNLLGLMQSHGIPPYIDPFFEFVSK 580