BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025899
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containi...   252   3e-65
ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|2...   245   3e-63
ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containi...   244   5e-63
ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arab...   239   2e-61
ref|NP_190263.1| pentatricopeptide repeat-containing protein [Ar...   238   5e-61

>ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  252 bits (643), Expect = 3e-65
 Identities = 117/160 (73%), Positives = 140/160 (87%)
 Frame = -2

Query: 486 GRQIFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMVRNEISPSIITFVSVLGACSH 307
           G ++F+RM KRD VSWNS+I+ YGIHG+G +AI+ FK+M+   +SPS I+FVSVLGACSH
Sbjct: 340 GHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSH 399

Query: 306 AGLVTEGKQIFDSMTREHKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDVWG 127
           AGLV EGK +F+SM R HK+ PS EHYAC+VDLLGRA RL+EAAK+++ MRIEPGP VWG
Sbjct: 400 AGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWG 459

Query: 126 SLLGACRIHCNVELAERASTRLFELEPMNAGNYVLLADIY 7
           SLLG+CRIHCNVELAERA++RLFELEP NAGNYVLLADIY
Sbjct: 460 SLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIY 499



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
 Frame = -2

Query: 480 QIFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMV--RNEISPSIITFVSVLGACSH 307
           ++FD+M  ++ VSW++MI  Y  +G  LEA+E F+ M+    ++ P+ +T VSVL AC+ 
Sbjct: 239 RVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAA 298

Query: 306 AGLVTEGKQIFDSMTRE--HKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDV 133
              + +GK +   + R     + P     + +V +  R G LE   +V E M      DV
Sbjct: 299 LAALEQGKLMHGYILRRGLDSILPV---VSALVTVYARCGNLELGHRVFERMEKR---DV 352

Query: 132 --WGSLLGACRIH 100
             W SL+ +  IH
Sbjct: 353 VSWNSLISSYGIH 365


>ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|222849824|gb|EEE87371.1|
           predicted protein [Populus trichocarpa]
          Length = 650

 Score =  245 bits (625), Expect = 3e-63
 Identities = 115/160 (71%), Positives = 136/160 (85%)
 Frame = -2

Query: 486 GRQIFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMVRNEISPSIITFVSVLGACSH 307
           G+++FD+M KRD VSWNS+I+ YG+HG+G +AI  F++M  N + PS I+FVSVLGACSH
Sbjct: 332 GQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSH 391

Query: 306 AGLVTEGKQIFDSMTREHKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDVWG 127
           AGLV EGK +F+SM   H + PS EHYAC+VDLLGRA RLEEAAK++E MRIEPGP VWG
Sbjct: 392 AGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWG 451

Query: 126 SLLGACRIHCNVELAERASTRLFELEPMNAGNYVLLADIY 7
           SLLG+CRIHCNVELAERAS RLF+LEP NAGNYVLLADIY
Sbjct: 452 SLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIY 491



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
 Frame = -2

Query: 477 IFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMV--RNEISPSIITFVSVLGACSHA 304
           +F++M  ++ VSW++MI  Y  +G   EA+E F++++    ++ P+ +T VSVL AC+  
Sbjct: 232 VFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAAL 291

Query: 303 GLVTEGKQIFDSMTRE--HKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDV- 133
             + +G+ I   + R+    + P     + +V +  R G+LE   +V + M      DV 
Sbjct: 292 AALEQGRLIHGYILRKGLDSILPV---ISALVTMYARCGKLELGQRVFDQM---DKRDVV 345

Query: 132 -WGSLLGACRIH 100
            W SL+ +  +H
Sbjct: 346 SWNSLISSYGVH 357


>ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449474033|ref|XP_004154055.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449510921|ref|XP_004163811.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  244 bits (623), Expect = 5e-63
 Identities = 113/160 (70%), Positives = 138/160 (86%)
 Frame = -2

Query: 486 GRQIFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMVRNEISPSIITFVSVLGACSH 307
           G+ IFDRM K+D V WNS+I+ YG+HGYG +AI+ F++M+ +  SPS I+F+SVLGACSH
Sbjct: 331 GQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSH 390

Query: 306 AGLVTEGKQIFDSMTREHKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDVWG 127
            GLV EGK++F+SM +EH + PS EHYAC+VDLLGRA RL+EAAK++E +RIEPGP VWG
Sbjct: 391 TGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWG 450

Query: 126 SLLGACRIHCNVELAERASTRLFELEPMNAGNYVLLADIY 7
           SLLGACRIHC+VELAERAS RLF+LEP NAGNYVLLADIY
Sbjct: 451 SLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIY 490



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
 Frame = -2

Query: 477 IFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMVRN--EISPSIITFVSVLGACSHA 304
           +FD M  ++ VSW++MI  Y  +G   EA+E F++M+ N  +  P+ +T VSVL AC+  
Sbjct: 231 VFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAF 290

Query: 303 GLVTEGKQIFDSMTRE--HKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDVW 130
             + +GK I   + R     + P     + ++ +  R G+LE    + + M  +    +W
Sbjct: 291 AALEQGKLIHAYILRRGLDSILPV---ISALITMYARCGKLESGQLIFDRMH-KKDVVLW 346

Query: 129 GSLLGACRIH 100
            SL+ +  +H
Sbjct: 347 NSLISSYGLH 356


>ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata] gi|297323351|gb|EFH53772.1| hypothetical protein
           ARALYDRAFT_905886 [Arabidopsis lyrata subsp. lyrata]
          Length = 657

 Score =  239 bits (609), Expect = 2e-61
 Identities = 112/160 (70%), Positives = 135/160 (84%)
 Frame = -2

Query: 486 GRQIFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMVRNEISPSIITFVSVLGACSH 307
           G+++FDRM  RD VSWNS+I+ YG+HGYG +AI+ F++M+ N  SP+ +TFVSVLGACSH
Sbjct: 339 GQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSH 398

Query: 306 AGLVTEGKQIFDSMTREHKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDVWG 127
            GLV EGK++F+SM R+H + P  EHYAC+VDLLGRA RL+EAAK+V+ MR EPGP VWG
Sbjct: 399 EGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG 458

Query: 126 SLLGACRIHCNVELAERASTRLFELEPMNAGNYVLLADIY 7
           SLLG+CRIH NVELAERAS RLF LEP NAGNYVLLADIY
Sbjct: 459 SLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIY 498



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
 Frame = -2

Query: 477 IFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMVRN--EISPSIITFVSVLGACSHA 304
           +F+ M  R+ VSW++MI  Y  +G   EA+  F++M+    + SP+ +T VSVL AC+  
Sbjct: 239 VFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASL 298

Query: 303 GLVTEGKQIFDSMTRE--HKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDVW 130
             + +G+ I   + R     + P     + +V + GR G+L+   +V + M  +     W
Sbjct: 299 AALEQGRLIHGYILRRGLDSILPV---ISALVTMYGRCGKLDVGQRVFDRMH-DRDVVSW 354

Query: 129 GSLLGACRIH 100
            SL+ +  +H
Sbjct: 355 NSLISSYGVH 364


>ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
           gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis
           thaliana] gi|110741961|dbj|BAE98921.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332644684|gb|AEE78205.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  238 bits (606), Expect = 5e-61
 Identities = 111/160 (69%), Positives = 135/160 (84%)
 Frame = -2

Query: 486 GRQIFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMVRNEISPSIITFVSVLGACSH 307
           G+++FDRM  RD VSWNS+I+ YG+HGYG +AI+ F++M+ N  SP+ +TFVSVLGACSH
Sbjct: 339 GQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSH 398

Query: 306 AGLVTEGKQIFDSMTREHKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDVWG 127
            GLV EGK++F++M R+H + P  EHYAC+VDLLGRA RL+EAAK+V+ MR EPGP VWG
Sbjct: 399 EGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG 458

Query: 126 SLLGACRIHCNVELAERASTRLFELEPMNAGNYVLLADIY 7
           SLLG+CRIH NVELAERAS RLF LEP NAGNYVLLADIY
Sbjct: 459 SLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIY 498



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
 Frame = -2

Query: 477 IFDRMVKRDTVSWNSMITGYGIHGYGLEAIEFFKDMVRN--EISPSIITFVSVLGACSHA 304
           +F  M  R+ VSW++MI  Y  +G   EA+  F++M+R   + SP+ +T VSVL AC+  
Sbjct: 239 VFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASL 298

Query: 303 GLVTEGKQIFDSMTRE--HKVTPSREHYACVVDLLGRAGRLEEAAKVVEGMRIEPGPDVW 130
             + +GK I   + R     + P     + +V + GR G+LE   +V + M  +     W
Sbjct: 299 AALEQGKLIHGYILRRGLDSILPV---ISALVTMYGRCGKLEVGQRVFDRMH-DRDVVSW 354

Query: 129 GSLLGACRIH 100
            SL+ +  +H
Sbjct: 355 NSLISSYGVH 364