BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025842
         (849 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thal...   519   e-145
ref|XP_002457538.1| hypothetical protein SORBIDRAFT_03g009030 [S...   519   e-145
ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp....   518   e-145
ref|XP_002529848.1| DNA repair and recombination protein RAD26, ...   517   e-144
ref|XP_003568718.1| PREDICTED: DNA repair protein rhp26-like [Br...   516   e-144

>ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thaliana]
            gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA
            repair and recombination protein [Arabidopsis thaliana]
            gi|330251711|gb|AEC06805.1| DNA excision repair protein E
            [Arabidopsis thaliana]
          Length = 1187

 Score =  519 bits (1337), Expect = e-145
 Identities = 254/282 (90%), Positives = 268/282 (95%)
 Frame = -3

Query: 847  YAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVFPGKLGVLP 668
            YAVLDEGHRIRNPN++ITLVCKQLQTVHRIIMTGAPIQNKL ELWSLFDFVFPGKLGVLP
Sbjct: 541  YAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLP 600

Query: 667  VFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPKKTEHV 488
            VFEAEF+VPI+VGGY+NA+PLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHL KKTEHV
Sbjct: 601  VFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHV 660

Query: 487  LFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSSNNPDY 308
            LFCSLT+EQRS YR+FLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHS  NPDY
Sbjct: 661  LFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSHQNPDY 720

Query: 307  GNPVRSGKMKVATQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDYTYRRMDGLTPVK 128
            GNP RSGKMKV  +VLKVWK QGHRVLLFSQTQQMLDILESFL A +Y+YRRMDGLTPVK
Sbjct: 721  GNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVK 780

Query: 127  QRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDP 2
            QRM LIDEFNNS ++FVF+LTTKVGGLGTNL GANRVIIFDP
Sbjct: 781  QRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDP 822


>ref|XP_002457538.1| hypothetical protein SORBIDRAFT_03g009030 [Sorghum bicolor]
            gi|241929513|gb|EES02658.1| hypothetical protein
            SORBIDRAFT_03g009030 [Sorghum bicolor]
          Length = 1208

 Score =  519 bits (1336), Expect = e-145
 Identities = 253/282 (89%), Positives = 268/282 (95%)
 Frame = -3

Query: 847  YAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVFPGKLGVLP 668
            YAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKL+ELWSLFDFVFPGKLGVLP
Sbjct: 549  YAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLP 608

Query: 667  VFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPKKTEHV 488
            VFE EF+VPI+VGGY+NATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA LPKKTEHV
Sbjct: 609  VFETEFSVPITVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHV 668

Query: 487  LFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSSNNPDY 308
            LFCSLT EQRS YR+FLASSEVEQIFDGNRNSLYGIDV+RKICNHPDLLEREH++ NPDY
Sbjct: 669  LFCSLTPEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREHAAQNPDY 728

Query: 307  GNPVRSGKMKVATQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDYTYRRMDGLTPVK 128
            GNP RSGKMKV  QVLKVWKDQGHRVLLF+QTQQMLDILE+FL A DY YRRMDGLTP K
Sbjct: 729  GNPERSGKMKVVEQVLKVWKDQGHRVLLFTQTQQMLDILENFLTACDYQYRRMDGLTPAK 788

Query: 127  QRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDP 2
            QRM LIDEFNN++E+FVFILTTKVGGLGTNL GANR+II+DP
Sbjct: 789  QRMALIDEFNNTDEIFVFILTTKVGGLGTNLTGANRIIIYDP 830


>ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297332105|gb|EFH62524.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 1181

 Score =  518 bits (1335), Expect = e-145
 Identities = 254/282 (90%), Positives = 268/282 (95%)
 Frame = -3

Query: 847  YAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVFPGKLGVLP 668
            YAVLDEGHRIRNPN++ITLVCKQLQTVHRIIMTGAPIQNKL ELWSLFDFVFPGKLGVLP
Sbjct: 539  YAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLP 598

Query: 667  VFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPKKTEHV 488
            VFEAEF+VPI+VGGY+NA+PLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHL KKTEHV
Sbjct: 599  VFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHV 658

Query: 487  LFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSSNNPDY 308
            LFCSLT+EQRS YR+FLASSEVEQI DGNRNSLYGIDVMRKICNHPDLLEREHS  NPDY
Sbjct: 659  LFCSLTVEQRSTYRAFLASSEVEQILDGNRNSLYGIDVMRKICNHPDLLEREHSHQNPDY 718

Query: 307  GNPVRSGKMKVATQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDYTYRRMDGLTPVK 128
            GNP RSGKMKV  +VLKVWK QGHRVLLFSQTQQMLDILESFL A +Y+YRRMDGLTPVK
Sbjct: 719  GNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVK 778

Query: 127  QRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDP 2
            QRM LIDEFNNS++VFVF+LTTKVGGLGTNL GANRVIIFDP
Sbjct: 779  QRMALIDEFNNSDDVFVFVLTTKVGGLGTNLTGANRVIIFDP 820


>ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
            communis] gi|223530676|gb|EEF32549.1| DNA repair and
            recombination protein RAD26, putative [Ricinus communis]
          Length = 1230

 Score =  517 bits (1332), Expect = e-144
 Identities = 250/282 (88%), Positives = 268/282 (95%)
 Frame = -3

Query: 847  YAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVFPGKLGVLP 668
            YAVLDEGHRIRNPNAE+TL+CKQLQTVHRIIMTGAPIQNKL+ELWSLFDFVFPGKLGVLP
Sbjct: 557  YAVLDEGHRIRNPNAEVTLICKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLP 616

Query: 667  VFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPKKTEHV 488
            VFEAEFAVPISVGGY+NA+PLQVSTAYRCAVVLRDLIMPYLLRRMK DVNA LPKKTEHV
Sbjct: 617  VFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKVDVNAQLPKKTEHV 676

Query: 487  LFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSSNNPDY 308
            LFCSLT EQRS+YR+FLAS+EVEQI DG+RNSLYGIDVMRKICNHPDLLEREHS  NPDY
Sbjct: 677  LFCSLTAEQRSVYRAFLASTEVEQIIDGSRNSLYGIDVMRKICNHPDLLEREHSCQNPDY 736

Query: 307  GNPVRSGKMKVATQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDYTYRRMDGLTPVK 128
            GNP RSGKM+V  QVLKVW++QGHRVLLF+QTQQMLDILE FL +G Y+YRRMDGLTP+K
Sbjct: 737  GNPDRSGKMRVVAQVLKVWREQGHRVLLFAQTQQMLDILEIFLNSGGYSYRRMDGLTPIK 796

Query: 127  QRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDP 2
            QRM LIDEFNNSN+VF+FILTTKVGGLGTNL GANRVIIFDP
Sbjct: 797  QRMALIDEFNNSNDVFIFILTTKVGGLGTNLTGANRVIIFDP 838


>ref|XP_003568718.1| PREDICTED: DNA repair protein rhp26-like [Brachypodium distachyon]
          Length = 1218

 Score =  516 bits (1328), Expect = e-144
 Identities = 251/282 (89%), Positives = 267/282 (94%)
 Frame = -3

Query: 847  YAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVFPGKLGVLP 668
            YAVLDEGHRIRNPNAE+TLVCKQLQTVHRIIMTGAPIQNKL+ELWSLFDFVFPGKLGVLP
Sbjct: 559  YAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLP 618

Query: 667  VFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPKKTEHV 488
            VFE EF+VPI VGGY+NATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA LPKKTEHV
Sbjct: 619  VFEIEFSVPIKVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHV 678

Query: 487  LFCSLTMEQRSIYRSFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSSNNPDY 308
            LFCSLT EQR+ YR+FLASSEVEQIFDGNRNSLYGIDV+RKICNHPDLLEREH++ +PDY
Sbjct: 679  LFCSLTPEQRATYRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREHAAQDPDY 738

Query: 307  GNPVRSGKMKVATQVLKVWKDQGHRVLLFSQTQQMLDILESFLRAGDYTYRRMDGLTPVK 128
            GNP RSGKMKV  QVLKVWKDQGHRVLLF+QTQQMLDILE+FL A DY YRRMDGLTP K
Sbjct: 739  GNPERSGKMKVVEQVLKVWKDQGHRVLLFAQTQQMLDILENFLTACDYPYRRMDGLTPAK 798

Query: 127  QRMTLIDEFNNSNEVFVFILTTKVGGLGTNLIGANRVIIFDP 2
            QRM LIDEFNN++E+F+FILTTKVGGLGTNL GANRVIIFDP
Sbjct: 799  QRMALIDEFNNTDEIFIFILTTKVGGLGTNLTGANRVIIFDP 840