BLASTX nr result
ID: Coptis25_contig00025839
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025839 (607 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana] 65 7e-09 ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S... 65 7e-09 emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 63 4e-08 emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 63 5e-08 gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 61 1e-07 >gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana] Length = 238 Score = 65.5 bits (158), Expect = 7e-09 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = -1 Query: 607 CRGMGSSTAVQNLKDLVRQHQPDIICLSETKVGESKISMLSKVLKFDNFFCVPAAGHSGG 428 C+G+G V+ LK++ R++ PD+ICLSETK + L F NF VP+ G SGG Sbjct: 61 CQGLGIDLTVRRLKEINRKYLPDVICLSETKQRNDYVRDTCCELGFSNFVMVPSMGLSGG 120 Query: 427 LAMFWKAGVELEV 389 L + WK V + V Sbjct: 121 LVVLWKPSVHISV 133 >ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor] gi|241936261|gb|EES09406.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor] Length = 753 Score = 65.5 bits (158), Expect = 7e-09 Identities = 27/73 (36%), Positives = 45/73 (61%) Frame = -1 Query: 607 CRGMGSSTAVQNLKDLVRQHQPDIICLSETKVGESKISMLSKVLKFDNFFCVPAAGHSGG 428 CRG+G+ V+ L+DL + + P ++ + ET++ + ++ L L FDN F V ++G SGG Sbjct: 8 CRGIGNPATVKELRDLAKDYAPSVMFIMETQISKYRVENLRYTLSFDNSFAVNSSGRSGG 67 Query: 427 LAMFWKAGVELEV 389 L +FW V L + Sbjct: 68 LGLFWNNDVLLSI 80 >emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1355 Score = 63.2 bits (152), Expect = 4e-08 Identities = 33/101 (32%), Positives = 53/101 (52%) Frame = -1 Query: 607 CRGMGSSTAVQNLKDLVRQHQPDIICLSETKVGESKISMLSKVLKFDNFFCVPAAGHSGG 428 CRG+G+ +V+ L+ Q PDII +SET + + ++ L L F N F V + G +GG Sbjct: 8 CRGLGNPWSVRQLRSWSNQFAPDIIFVSETMINKIEVEALKSWLGFSNAFGVASVGRAGG 67 Query: 427 LAMFWKAGVELEVLGATSNQITGKQEWQQLEHWLGIGKE*W 305 L ++WK V ++ + + I G E + W +G W Sbjct: 68 LCLYWKEEVMFSLVSFSQHHICGDVE-DGNKKWRFVGVYGW 107 >emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1369 Score = 62.8 bits (151), Expect = 5e-08 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 4/85 (4%) Frame = -1 Query: 607 CRGMGSSTAVQNLKDLVRQHQPDIICLSETKVGESKISMLSKVLKFDNFFCVPAAG---- 440 CRGMGS +A+ L+ L+ P I+ LSETK+ ++ + K LK+++ V G Sbjct: 9 CRGMGSPSALSALRRLLASENPQIVFLSETKLKSYEMESVKKKLKWEHMVAVDCEGECRK 68 Query: 439 HSGGLAMFWKAGVELEVLGATSNQI 365 GGLAM W++ ++++V+ +SN I Sbjct: 69 RRGGLAMLWRSEIKVQVMSMSSNHI 93 >gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa Japonica Group] Length = 1382 Score = 61.2 bits (147), Expect = 1e-07 Identities = 33/93 (35%), Positives = 49/93 (52%) Frame = -1 Query: 607 CRGMGSSTAVQNLKDLVRQHQPDIICLSETKVGESKISMLSKVLKFDNFFCVPAAGHSGG 428 CRG+GS+ V L+ LV+ +P ++ LSETK+ + + L L F F V G SGG Sbjct: 13 CRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVSCEGLSGG 72 Query: 427 LAMFWKAGVELEVLGATSNQITGKQEWQQLEHW 329 LA+FW + + G S+ I ++L W Sbjct: 73 LALFWTTAYTVSLRGFNSHFIDVLVSTEELPPW 105