BLASTX nr result
ID: Coptis25_contig00025834
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025834 (1497 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 124 3e-46 gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 111 2e-31 gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 111 2e-31 dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 93 2e-31 gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 97 3e-31 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 124 bits (311), Expect(3) = 3e-46 Identities = 66/217 (30%), Positives = 120/217 (55%), Gaps = 1/217 (0%) Frame = +1 Query: 829 WNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSDKCVMLKQ 1008 WNR VFG++D V+ EE+ Q++ D +D L +E L+L +AL + + ++ Sbjct: 293 WNRTVFGDVDRKVRMAVEEVNRIQQIIDSVGFSDQLYAQELEAHLILTKALHYQDELWRE 352 Query: 1009 KSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFYEEKFK 1188 K ++ G+R+T+YFH + +V+ + ++ + + ++ D I+ HV+ +++ F Sbjct: 353 KLRDQRFIHGDRNTAYFHRISKVRATKNTISFLQ-DGDAVITDPARIEVHVLNYFQAIFS 411 Query: 1189 F-HPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGFNGAFFH 1365 + ++ + + +P LVS DN L +P + ++ AVF ++ +PGP+GF G F+ Sbjct: 412 VDNSCIQNDLVVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQ 471 Query: 1366 HCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476 W IV DV ++Q FFI+ + NSN + LIPK Sbjct: 472 TYWDIVGADVIQSVQDFFISGQLAQNINSNLIVLIPK 508 Score = 68.9 bits (167), Expect(3) = 3e-46 Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 8/151 (5%) Frame = +3 Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569 VL EKR R P L +F N NA L LG TW N ++G+ +A ++DRA Sbjct: 141 VLGAHEKRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFYTWSNGRLGSDNVALRLDRAI 200 Query: 570 YNNVWNIRFNSWKYKVWSRCG--------SDHSPLVGELKVVPRATNTPFRFNICWLSHP 725 N W N W+ S G SDH PL+ + + F+F W H Sbjct: 201 CNEEW---VNFWRSSSCSALGNSALVRHQSDHHPLLMSMDFCTSQRSGNFKFFKTWTEHE 257 Query: 726 TFMDVVRHNWNQNIIGGPMVVLMKKLHRLKR 818 +V NW+++ G M L KL +K+ Sbjct: 258 DCRRIVAENWSKHTRGHGMTRLQAKLKHMKQ 288 Score = 40.8 bits (94), Expect(3) = 3e-46 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Frame = +2 Query: 197 WIIHKRELVVDLIHMSRQQITVWVG----DAFVSAVHAHCPMNLRRVLWAELQAMN--FG 358 W + RE+ ++ +S Q I + + +V+AV+A RR LWAEL + F Sbjct: 70 WALWGREVSAIVMFISDQCIALEISCHQSTVYVAAVYASTFYLKRRQLWAELTNLQGCFQ 129 Query: 359 DPWLVIGDFNCL 394 PWL IGDFN + Sbjct: 130 GPWLFIGDFNAV 141 >gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa Japonica Group] Length = 1382 Score = 111 bits (277), Expect(3) = 2e-31 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Frame = +1 Query: 820 LKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSD---- 987 LK W++ FG++ + K + +L + Q P ND VI++E L++Q L + Sbjct: 296 LKDWSKASFGSVRRKILKMERKLKSLR----QSPVND----VVIQEEKLIEQQLCELFEK 347 Query: 988 KCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQ 1167 + +M +Q+S W+ G+R+T++FH ++ + + E+ + G+ QE IK+ Sbjct: 348 EEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEV 407 Query: 1168 FYEEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGF 1347 FYE F P E++ + +P V + N L T I+ A+F M +PGPDGF Sbjct: 408 FYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 467 Query: 1348 NGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476 F+ W I+ +C A++ F + +P G + V LIPK Sbjct: 468 PALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPK 510 Score = 46.6 bits (109), Expect(3) = 2e-31 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Frame = +3 Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569 VL E G R + M+ F + ++ C LI+ +G + TW N Q ++DRA Sbjct: 146 VLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAV 205 Query: 570 YNNVWNIRFNSWKYKVWSRCGSDHSPLVGEL-------KVVPRATNTPFRFNICWLSHPT 728 N ++ F + SDH + +L + +P FRF WL Sbjct: 206 ANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIP--IQQGFRFEAAWLRAED 263 Query: 729 FMDVVRHNWNQNIIG 773 + +VV ++W + G Sbjct: 264 YREVVENSWRISSAG 278 Score = 26.2 bits (56), Expect(3) = 2e-31 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = +2 Query: 281 VSAVHAHCPMNLRRVLWAELQAMN--FGDPWLVIGDFN 388 +S V+ LR W L+ ++ + PWL GDFN Sbjct: 107 ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFN 144 >gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical protein OsJ_32156 [Oryza sativa Japonica Group] Length = 1339 Score = 111 bits (277), Expect(3) = 2e-31 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Frame = +1 Query: 820 LKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSD---- 987 LK W++ FG++ + K + +L + Q P ND VI++E L++Q L + Sbjct: 253 LKDWSKASFGSVRRKILKMERKLKSLR----QSPVND----VVIQEEKLIEQQLCELFEK 304 Query: 988 KCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQ 1167 + +M +Q+S W+ G+R+T++FH ++ + + E+ + G+ QE IK+ Sbjct: 305 EEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEV 364 Query: 1168 FYEEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGF 1347 FYE F P E++ + +P V + N L T I+ A+F M +PGPDGF Sbjct: 365 FYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 424 Query: 1348 NGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476 F+ W I+ +C A++ F + +P G + V LIPK Sbjct: 425 PALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPK 467 Score = 46.6 bits (109), Expect(3) = 2e-31 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Frame = +3 Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569 VL E G R + M+ F + ++ C LI+ +G + TW N Q ++DRA Sbjct: 103 VLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAV 162 Query: 570 YNNVWNIRFNSWKYKVWSRCGSDHSPLVGEL-------KVVPRATNTPFRFNICWLSHPT 728 N ++ F + SDH + +L + +P FRF WL Sbjct: 163 ANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIP--IQQGFRFEAAWLRAED 220 Query: 729 FMDVVRHNWNQNIIG 773 + +VV ++W + G Sbjct: 221 YREVVENSWRISSAG 235 Score = 26.2 bits (56), Expect(3) = 2e-31 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = +2 Query: 281 VSAVHAHCPMNLRRVLWAELQAMN--FGDPWLVIGDFN 388 +S V+ LR W L+ ++ + PWL GDFN Sbjct: 64 ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFN 101 >dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1223 Score = 92.8 bits (229), Expect(4) = 2e-31 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 9/230 (3%) Frame = +1 Query: 817 ELKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTN-----DDLVNSVIEKELLLDQAL 981 ++++ R GN+ + + L Q V+ +P++ ++ S ++ +L++ Sbjct: 297 KIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEKY 356 Query: 982 SDKCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHV 1161 LKQKS W G+++T FH ++AH+ + EI + G + + IK Sbjct: 357 ------LKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEA 410 Query: 1162 VQFYEEKFKFHPVQYD----EQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASS 1329 +F+ E + P ++ +L ++P+ S+ D L T I++ +F M S Sbjct: 411 ERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKS 470 Query: 1330 PGPDGFNGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPKE 1479 PGPDG+ FF W I+ + A+Q FF +P G NS + LIPK+ Sbjct: 471 PGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKK 520 Score = 47.0 bits (110), Expect(4) = 2e-31 Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Frame = +3 Query: 441 MEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAFYNNVWNIRFNSWKYKVW 620 M +F IN CSL + G TWCN + G I K+DR N+ WN F S Y V+ Sbjct: 165 MRDFQQVINYCSLTDMAAQGPLFTWCNKR-EHGLIMKKLDRVLINDCWNQTF-SQSYSVF 222 Query: 621 SRCG-SDHSPLVGELKVVPRATN-----TPFRFNICWLSHPTFMDVVRHNWNQNIIGGPM 782 G SDH L + + A N PF+F F +V W P+ Sbjct: 223 EAGGCSDH--LRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDT---EPL 277 Query: 783 VVLMKKLHRLKR 818 ++ L R + Sbjct: 278 ILSTSTLFRFSK 289 Score = 35.0 bits (79), Expect(4) = 2e-31 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Frame = +2 Query: 185 QGE*WIIHKRELVVDLIHMSRQQITVWV------GDAFVSAVHAHCPMNLRRVLWAELQ- 343 +G W++ ++ + + I+ S Q +T V + F S V+A + R+VLW+EL+ Sbjct: 66 RGRIWVLWRKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELKD 125 Query: 344 ----AMNFGDPWLVIGDFN 388 + PW ++GDFN Sbjct: 126 HYDSPIIRHKPWTLLGDFN 144 Score = 28.9 bits (63), Expect(4) = 2e-31 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +3 Query: 3 WNIRGVRKDSTLERIRDFVKSCSFDLICLEESLV 104 WN+RG+ K S I+ +++ +F CL E+ V Sbjct: 6 WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRV 39 >gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1621 Score = 97.1 bits (240), Expect(3) = 3e-31 Identities = 58/224 (25%), Positives = 114/224 (50%), Gaps = 2/224 (0%) Frame = +1 Query: 820 LKAWNRLVFGNIDSNVKKTQEELMETQR--VSDQDPTNDDLVNSVIEKELLLDQALSDKC 993 L +W+ V G+++ VKK ++EL +R +S ++++ +EK L+Q + Sbjct: 536 LSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEK---LEQQVD--- 589 Query: 994 VMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFY 1173 + KQ++ W++ G+R+TS+FH ++ + + ++ E G+ + +E + +++F+ Sbjct: 590 IYWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFF 649 Query: 1174 EEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGFNG 1353 ++ F + Q ++L +VV VS N L T +++A+ + +PGPDG Sbjct: 650 KQLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPA 709 Query: 1354 AFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPKEKK 1485 F+ CW +V V + +P G+N + LIPK KK Sbjct: 710 GFYKACWDVVGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKK 753 Score = 63.9 bits (154), Expect(3) = 3e-31 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Frame = +3 Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIG-AGRIASKIDRA 566 +L EK+GGR+ + M+EF + + C L + G TW N+ G I ++DRA Sbjct: 387 ILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRA 446 Query: 567 FYNNVWNIRFNSWKYKVWSRCGSDHSPLVGELK-----VVPRATNTPFRFNICWLSHPTF 731 N W F + + SDH P++ EL+ V R + FRF WL F Sbjct: 447 VANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKF 506 Query: 732 MDVVRHNWN 758 +VV+ W+ Sbjct: 507 KEVVKEAWD 515 Score = 22.7 bits (47), Expect(3) = 3e-31 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%) Frame = +2 Query: 329 WAELQAM--NFGDPWLVIGDFN 388 W ++ + N PWL+ GDFN Sbjct: 364 WTTMRGLIDNPTTPWLMAGDFN 385