BLASTX nr result
ID: Coptis25_contig00025834
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00025834
(1497 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 124 3e-46
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 111 2e-31
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 111 2e-31
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 93 2e-31
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 97 3e-31
>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
Endonuclease/exonuclease/phosphatase [Medicago
truncatula]
Length = 1246
Score = 124 bits (311), Expect(3) = 3e-46
Identities = 66/217 (30%), Positives = 120/217 (55%), Gaps = 1/217 (0%)
Frame = +1
Query: 829 WNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSDKCVMLKQ 1008
WNR VFG++D V+ EE+ Q++ D +D L +E L+L +AL + + ++
Sbjct: 293 WNRTVFGDVDRKVRMAVEEVNRIQQIIDSVGFSDQLYAQELEAHLILTKALHYQDELWRE 352
Query: 1009 KSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFYEEKFK 1188
K ++ G+R+T+YFH + +V+ + ++ + + ++ D I+ HV+ +++ F
Sbjct: 353 KLRDQRFIHGDRNTAYFHRISKVRATKNTISFLQ-DGDAVITDPARIEVHVLNYFQAIFS 411
Query: 1189 F-HPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGFNGAFFH 1365
+ ++ + + +P LVS DN L +P + ++ AVF ++ +PGP+GF G F+
Sbjct: 412 VDNSCIQNDLVVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQ 471
Query: 1366 HCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476
W IV DV ++Q FFI+ + NSN + LIPK
Sbjct: 472 TYWDIVGADVIQSVQDFFISGQLAQNINSNLIVLIPK 508
Score = 68.9 bits (167), Expect(3) = 3e-46
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Frame = +3
Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569
VL EKR R P L +F N NA L LG TW N ++G+ +A ++DRA
Sbjct: 141 VLGAHEKRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFYTWSNGRLGSDNVALRLDRAI 200
Query: 570 YNNVWNIRFNSWKYKVWSRCG--------SDHSPLVGELKVVPRATNTPFRFNICWLSHP 725
N W N W+ S G SDH PL+ + + F+F W H
Sbjct: 201 CNEEW---VNFWRSSSCSALGNSALVRHQSDHHPLLMSMDFCTSQRSGNFKFFKTWTEHE 257
Query: 726 TFMDVVRHNWNQNIIGGPMVVLMKKLHRLKR 818
+V NW+++ G M L KL +K+
Sbjct: 258 DCRRIVAENWSKHTRGHGMTRLQAKLKHMKQ 288
Score = 40.8 bits (94), Expect(3) = 3e-46
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 197 WIIHKRELVVDLIHMSRQQITVWVG----DAFVSAVHAHCPMNLRRVLWAELQAMN--FG 358
W + RE+ ++ +S Q I + + +V+AV+A RR LWAEL + F
Sbjct: 70 WALWGREVSAIVMFISDQCIALEISCHQSTVYVAAVYASTFYLKRRQLWAELTNLQGCFQ 129
Query: 359 DPWLVIGDFNCL 394
PWL IGDFN +
Sbjct: 130 GPWLFIGDFNAV 141
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 111 bits (277), Expect(3) = 2e-31
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)
Frame = +1
Query: 820 LKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSD---- 987
LK W++ FG++ + K + +L + Q P ND VI++E L++Q L +
Sbjct: 296 LKDWSKASFGSVRRKILKMERKLKSLR----QSPVND----VVIQEEKLIEQQLCELFEK 347
Query: 988 KCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQ 1167
+ +M +Q+S W+ G+R+T++FH ++ + + E+ + G+ QE IK+
Sbjct: 348 EEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEV 407
Query: 1168 FYEEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGF 1347
FYE F P E++ + +P V + N L T I+ A+F M +PGPDGF
Sbjct: 408 FYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 467
Query: 1348 NGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476
F+ W I+ +C A++ F + +P G + V LIPK
Sbjct: 468 PALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPK 510
Score = 46.6 bits (109), Expect(3) = 2e-31
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Frame = +3
Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569
VL E G R + M+ F + ++ C LI+ +G + TW N Q ++DRA
Sbjct: 146 VLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAV 205
Query: 570 YNNVWNIRFNSWKYKVWSRCGSDHSPLVGEL-------KVVPRATNTPFRFNICWLSHPT 728
N ++ F + SDH + +L + +P FRF WL
Sbjct: 206 ANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIP--IQQGFRFEAAWLRAED 263
Query: 729 FMDVVRHNWNQNIIG 773
+ +VV ++W + G
Sbjct: 264 YREVVENSWRISSAG 278
Score = 26.2 bits (56), Expect(3) = 2e-31
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 281 VSAVHAHCPMNLRRVLWAELQAMN--FGDPWLVIGDFN 388
+S V+ LR W L+ ++ + PWL GDFN
Sbjct: 107 ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFN 144
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 111 bits (277), Expect(3) = 2e-31
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)
Frame = +1
Query: 820 LKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSD---- 987
LK W++ FG++ + K + +L + Q P ND VI++E L++Q L +
Sbjct: 253 LKDWSKASFGSVRRKILKMERKLKSLR----QSPVND----VVIQEEKLIEQQLCELFEK 304
Query: 988 KCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQ 1167
+ +M +Q+S W+ G+R+T++FH ++ + + E+ + G+ QE IK+
Sbjct: 305 EEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEV 364
Query: 1168 FYEEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGF 1347
FYE F P E++ + +P V + N L T I+ A+F M +PGPDGF
Sbjct: 365 FYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 424
Query: 1348 NGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476
F+ W I+ +C A++ F + +P G + V LIPK
Sbjct: 425 PALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPK 467
Score = 46.6 bits (109), Expect(3) = 2e-31
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Frame = +3
Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569
VL E G R + M+ F + ++ C LI+ +G + TW N Q ++DRA
Sbjct: 103 VLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAV 162
Query: 570 YNNVWNIRFNSWKYKVWSRCGSDHSPLVGEL-------KVVPRATNTPFRFNICWLSHPT 728
N ++ F + SDH + +L + +P FRF WL
Sbjct: 163 ANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIP--IQQGFRFEAAWLRAED 220
Query: 729 FMDVVRHNWNQNIIG 773
+ +VV ++W + G
Sbjct: 221 YREVVENSWRISSAG 235
Score = 26.2 bits (56), Expect(3) = 2e-31
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 281 VSAVHAHCPMNLRRVLWAELQAMN--FGDPWLVIGDFN 388
+S V+ LR W L+ ++ + PWL GDFN
Sbjct: 64 ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFN 101
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 92.8 bits (229), Expect(4) = 2e-31
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 9/230 (3%)
Frame = +1
Query: 817 ELKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTN-----DDLVNSVIEKELLLDQAL 981
++++ R GN+ + + L Q V+ +P++ ++ S ++ +L++
Sbjct: 297 KIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEKY 356
Query: 982 SDKCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHV 1161
LKQKS W G+++T FH ++AH+ + EI + G + + IK
Sbjct: 357 ------LKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEA 410
Query: 1162 VQFYEEKFKFHPVQYD----EQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASS 1329
+F+ E + P ++ +L ++P+ S+ D L T I++ +F M S
Sbjct: 411 ERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKS 470
Query: 1330 PGPDGFNGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPKE 1479
PGPDG+ FF W I+ + A+Q FF +P G NS + LIPK+
Sbjct: 471 PGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKK 520
Score = 47.0 bits (110), Expect(4) = 2e-31
Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
Frame = +3
Query: 441 MEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAFYNNVWNIRFNSWKYKVW 620
M +F IN CSL + G TWCN + G I K+DR N+ WN F S Y V+
Sbjct: 165 MRDFQQVINYCSLTDMAAQGPLFTWCNKR-EHGLIMKKLDRVLINDCWNQTF-SQSYSVF 222
Query: 621 SRCG-SDHSPLVGELKVVPRATN-----TPFRFNICWLSHPTFMDVVRHNWNQNIIGGPM 782
G SDH L + + A N PF+F F +V W P+
Sbjct: 223 EAGGCSDH--LRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDT---EPL 277
Query: 783 VVLMKKLHRLKR 818
++ L R +
Sbjct: 278 ILSTSTLFRFSK 289
Score = 35.0 bits (79), Expect(4) = 2e-31
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Frame = +2
Query: 185 QGE*WIIHKRELVVDLIHMSRQQITVWV------GDAFVSAVHAHCPMNLRRVLWAELQ- 343
+G W++ ++ + + I+ S Q +T V + F S V+A + R+VLW+EL+
Sbjct: 66 RGRIWVLWRKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELKD 125
Query: 344 ----AMNFGDPWLVIGDFN 388
+ PW ++GDFN
Sbjct: 126 HYDSPIIRHKPWTLLGDFN 144
Score = 28.9 bits (63), Expect(4) = 2e-31
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 3 WNIRGVRKDSTLERIRDFVKSCSFDLICLEESLV 104
WN+RG+ K S I+ +++ +F CL E+ V
Sbjct: 6 WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRV 39
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 97.1 bits (240), Expect(3) = 3e-31
Identities = 58/224 (25%), Positives = 114/224 (50%), Gaps = 2/224 (0%)
Frame = +1
Query: 820 LKAWNRLVFGNIDSNVKKTQEELMETQR--VSDQDPTNDDLVNSVIEKELLLDQALSDKC 993
L +W+ V G+++ VKK ++EL +R +S ++++ +EK L+Q +
Sbjct: 536 LSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEK---LEQQVD--- 589
Query: 994 VMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFY 1173
+ KQ++ W++ G+R+TS+FH ++ + + ++ E G+ + +E + +++F+
Sbjct: 590 IYWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFF 649
Query: 1174 EEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGFNG 1353
++ F + Q ++L +VV VS N L T +++A+ + +PGPDG
Sbjct: 650 KQLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPA 709
Query: 1354 AFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPKEKK 1485
F+ CW +V V + +P G+N + LIPK KK
Sbjct: 710 GFYKACWDVVGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKK 753
Score = 63.9 bits (154), Expect(3) = 3e-31
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Frame = +3
Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIG-AGRIASKIDRA 566
+L EK+GGR+ + M+EF + + C L + G TW N+ G I ++DRA
Sbjct: 387 ILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRA 446
Query: 567 FYNNVWNIRFNSWKYKVWSRCGSDHSPLVGELK-----VVPRATNTPFRFNICWLSHPTF 731
N W F + + SDH P++ EL+ V R + FRF WL F
Sbjct: 447 VANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKF 506
Query: 732 MDVVRHNWN 758
+VV+ W+
Sbjct: 507 KEVVKEAWD 515
Score = 22.7 bits (47), Expect(3) = 3e-31
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +2
Query: 329 WAELQAM--NFGDPWLVIGDFN 388
W ++ + N PWL+ GDFN
Sbjct: 364 WTTMRGLIDNPTTPWLMAGDFN 385