BLASTX nr result

ID: Coptis25_contig00025834 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025834
         (1497 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   124   3e-46
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   111   2e-31
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...   111   2e-31
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    93   2e-31
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    97   3e-31

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  124 bits (311), Expect(3) = 3e-46
 Identities = 66/217 (30%), Positives = 120/217 (55%), Gaps = 1/217 (0%)
 Frame = +1

Query: 829  WNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSDKCVMLKQ 1008
            WNR VFG++D  V+   EE+   Q++ D    +D L    +E  L+L +AL  +  + ++
Sbjct: 293  WNRTVFGDVDRKVRMAVEEVNRIQQIIDSVGFSDQLYAQELEAHLILTKALHYQDELWRE 352

Query: 1009 KSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFYEEKFK 1188
            K  ++    G+R+T+YFH + +V+   + ++ +  +   ++ D   I+ HV+ +++  F 
Sbjct: 353  KLRDQRFIHGDRNTAYFHRISKVRATKNTISFLQ-DGDAVITDPARIEVHVLNYFQAIFS 411

Query: 1189 F-HPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGFNGAFFH 1365
              +    ++ + + +P LVS  DN  L  +P +  ++ AVF ++   +PGP+GF G F+ 
Sbjct: 412  VDNSCIQNDLVVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQ 471

Query: 1366 HCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476
              W IV  DV  ++Q FFI+  +    NSN + LIPK
Sbjct: 472  TYWDIVGADVIQSVQDFFISGQLAQNINSNLIVLIPK 508



 Score = 68.9 bits (167), Expect(3) = 3e-46
 Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
 Frame = +3

Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569
           VL   EKR  R P  L   +F N  NA  L     LG   TW N ++G+  +A ++DRA 
Sbjct: 141 VLGAHEKRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFYTWSNGRLGSDNVALRLDRAI 200

Query: 570 YNNVWNIRFNSWKYKVWSRCG--------SDHSPLVGELKVVPRATNTPFRFNICWLSHP 725
            N  W    N W+    S  G        SDH PL+  +       +  F+F   W  H 
Sbjct: 201 CNEEW---VNFWRSSSCSALGNSALVRHQSDHHPLLMSMDFCTSQRSGNFKFFKTWTEHE 257

Query: 726 TFMDVVRHNWNQNIIGGPMVVLMKKLHRLKR 818
               +V  NW+++  G  M  L  KL  +K+
Sbjct: 258 DCRRIVAENWSKHTRGHGMTRLQAKLKHMKQ 288



 Score = 40.8 bits (94), Expect(3) = 3e-46
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
 Frame = +2

Query: 197 WIIHKRELVVDLIHMSRQQITVWVG----DAFVSAVHAHCPMNLRRVLWAELQAMN--FG 358
           W +  RE+   ++ +S Q I + +       +V+AV+A      RR LWAEL  +   F 
Sbjct: 70  WALWGREVSAIVMFISDQCIALEISCHQSTVYVAAVYASTFYLKRRQLWAELTNLQGCFQ 129

Query: 359 DPWLVIGDFNCL 394
            PWL IGDFN +
Sbjct: 130 GPWLFIGDFNAV 141


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score =  111 bits (277), Expect(3) = 2e-31
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)
 Frame = +1

Query: 820  LKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSD---- 987
            LK W++  FG++   + K + +L   +    Q P ND     VI++E L++Q L +    
Sbjct: 296  LKDWSKASFGSVRRKILKMERKLKSLR----QSPVND----VVIQEEKLIEQQLCELFEK 347

Query: 988  KCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQ 1167
            + +M +Q+S   W+  G+R+T++FH     ++  + + E+  + G+    QE IK+    
Sbjct: 348  EEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEV 407

Query: 1168 FYEEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGF 1347
            FYE  F   P    E++ + +P  V +  N  L    T   I+ A+F M    +PGPDGF
Sbjct: 408  FYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 467

Query: 1348 NGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476
               F+   W I+   +C A++ F +   +P G   + V LIPK
Sbjct: 468  PALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPK 510



 Score = 46.6 bits (109), Expect(3) = 2e-31
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
 Frame = +3

Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569
           VL   E  G R  +   M+ F + ++ C LI+   +G + TW N Q        ++DRA 
Sbjct: 146 VLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAV 205

Query: 570 YNNVWNIRFNSWKYKVWSRCGSDHSPLVGEL-------KVVPRATNTPFRFNICWLSHPT 728
            N  ++  F     +      SDH  +  +L       + +P      FRF   WL    
Sbjct: 206 ANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIP--IQQGFRFEAAWLRAED 263

Query: 729 FMDVVRHNWNQNIIG 773
           + +VV ++W  +  G
Sbjct: 264 YREVVENSWRISSAG 278



 Score = 26.2 bits (56), Expect(3) = 2e-31
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 281 VSAVHAHCPMNLRRVLWAELQAMN--FGDPWLVIGDFN 388
           +S V+      LR   W  L+ ++  +  PWL  GDFN
Sbjct: 107 ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFN 144


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
            protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score =  111 bits (277), Expect(3) = 2e-31
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)
 Frame = +1

Query: 820  LKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTNDDLVNSVIEKELLLDQALSD---- 987
            LK W++  FG++   + K + +L   +    Q P ND     VI++E L++Q L +    
Sbjct: 253  LKDWSKASFGSVRRKILKMERKLKSLR----QSPVND----VVIQEEKLIEQQLCELFEK 304

Query: 988  KCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQ 1167
            + +M +Q+S   W+  G+R+T++FH     ++  + + E+  + G+    QE IK+    
Sbjct: 305  EEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEV 364

Query: 1168 FYEEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGF 1347
            FYE  F   P    E++ + +P  V +  N  L    T   I+ A+F M    +PGPDGF
Sbjct: 365  FYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGF 424

Query: 1348 NGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPK 1476
               F+   W I+   +C A++ F +   +P G   + V LIPK
Sbjct: 425  PALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPK 467



 Score = 46.6 bits (109), Expect(3) = 2e-31
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
 Frame = +3

Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAF 569
           VL   E  G R  +   M+ F + ++ C LI+   +G + TW N Q        ++DRA 
Sbjct: 103 VLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAV 162

Query: 570 YNNVWNIRFNSWKYKVWSRCGSDHSPLVGEL-------KVVPRATNTPFRFNICWLSHPT 728
            N  ++  F     +      SDH  +  +L       + +P      FRF   WL    
Sbjct: 163 ANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIP--IQQGFRFEAAWLRAED 220

Query: 729 FMDVVRHNWNQNIIG 773
           + +VV ++W  +  G
Sbjct: 221 YREVVENSWRISSAG 235



 Score = 26.2 bits (56), Expect(3) = 2e-31
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 281 VSAVHAHCPMNLRRVLWAELQAMN--FGDPWLVIGDFN 388
           +S V+      LR   W  L+ ++  +  PWL  GDFN
Sbjct: 64  ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFN 101


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 92.8 bits (229), Expect(4) = 2e-31
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 9/230 (3%)
 Frame = +1

Query: 817  ELKAWNRLVFGNIDSNVKKTQEELMETQRVSDQDPTN-----DDLVNSVIEKELLLDQAL 981
            ++++  R   GN+     +  + L   Q V+  +P++     ++   S  ++  +L++  
Sbjct: 297  KIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEKY 356

Query: 982  SDKCVMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHV 1161
                  LKQKS   W   G+++T  FH     ++AH+ + EI +  G +    + IK   
Sbjct: 357  ------LKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEA 410

Query: 1162 VQFYEEKFKFHPVQYD----EQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASS 1329
             +F+ E  +  P  ++     +L  ++P+  S+ D   L    T   I++ +F M    S
Sbjct: 411  ERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKS 470

Query: 1330 PGPDGFNGAFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPKE 1479
            PGPDG+   FF   W I+  +   A+Q FF    +P G NS  + LIPK+
Sbjct: 471  PGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKK 520



 Score = 47.0 bits (110), Expect(4) = 2e-31
 Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
 Frame = +3

Query: 441 MEEFHNTINACSLIEAEHLGMELTWCNNQIGAGRIASKIDRAFYNNVWNIRFNSWKYKVW 620
           M +F   IN CSL +    G   TWCN +   G I  K+DR   N+ WN  F S  Y V+
Sbjct: 165 MRDFQQVINYCSLTDMAAQGPLFTWCNKR-EHGLIMKKLDRVLINDCWNQTF-SQSYSVF 222

Query: 621 SRCG-SDHSPLVGELKVVPRATN-----TPFRFNICWLSHPTFMDVVRHNWNQNIIGGPM 782
              G SDH  L   + +   A N      PF+F         F  +V   W       P+
Sbjct: 223 EAGGCSDH--LRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDT---EPL 277

Query: 783 VVLMKKLHRLKR 818
           ++    L R  +
Sbjct: 278 ILSTSTLFRFSK 289



 Score = 35.0 bits (79), Expect(4) = 2e-31
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
 Frame = +2

Query: 185 QGE*WIIHKRELVVDLIHMSRQQITVWV------GDAFVSAVHAHCPMNLRRVLWAELQ- 343
           +G  W++ ++ + +  I+ S Q +T  V       + F S V+A   +  R+VLW+EL+ 
Sbjct: 66  RGRIWVLWRKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELKD 125

Query: 344 ----AMNFGDPWLVIGDFN 388
                +    PW ++GDFN
Sbjct: 126 HYDSPIIRHKPWTLLGDFN 144



 Score = 28.9 bits (63), Expect(4) = 2e-31
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   WNIRGVRKDSTLERIRDFVKSCSFDLICLEESLV 104
           WN+RG+ K S    I+ +++  +F   CL E+ V
Sbjct: 6   WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRV 39


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 97.1 bits (240), Expect(3) = 3e-31
 Identities = 58/224 (25%), Positives = 114/224 (50%), Gaps = 2/224 (0%)
 Frame = +1

Query: 820  LKAWNRLVFGNIDSNVKKTQEELMETQR--VSDQDPTNDDLVNSVIEKELLLDQALSDKC 993
            L +W+  V G+++  VKK ++EL   +R  +S      ++++   +EK   L+Q +    
Sbjct: 536  LSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEK---LEQQVD--- 589

Query: 994  VMLKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFY 1173
            +  KQ++   W++ G+R+TS+FH     ++  + + ++  E G+ +  +E  +  +++F+
Sbjct: 590  IYWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFF 649

Query: 1174 EEKFKFHPVQYDEQLFNVVPLLVSEQDNALLSCMPTYA*IQQAVFDMDPASSPGPDGFNG 1353
            ++ F  +  Q  ++L +VV   VS   N  L    T   +++A+  +    +PGPDG   
Sbjct: 650  KQLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPA 709

Query: 1354 AFFHHCWPIVSVDVCFAIQPFFINLNVPTGFNSNFVTLIPKEKK 1485
             F+  CW +V   V   +        +P G+N   + LIPK KK
Sbjct: 710  GFYKACWDVVGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKK 753



 Score = 63.9 bits (154), Expect(3) = 3e-31
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
 Frame = +3

Query: 390 VLSYSEKRGGRLPNRLVMEEFHNTINACSLIEAEHLGMELTWCNNQIG-AGRIASKIDRA 566
           +L   EK+GGR+  +  M+EF + +  C L +    G   TW N+     G I  ++DRA
Sbjct: 387 ILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRA 446

Query: 567 FYNNVWNIRFNSWKYKVWSRCGSDHSPLVGELK-----VVPRATNTPFRFNICWLSHPTF 731
             N  W   F + +        SDH P++ EL+     V  R  +  FRF   WL    F
Sbjct: 447 VANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKF 506

Query: 732 MDVVRHNWN 758
            +VV+  W+
Sbjct: 507 KEVVKEAWD 515



 Score = 22.7 bits (47), Expect(3) = 3e-31
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +2

Query: 329 WAELQAM--NFGDPWLVIGDFN 388
           W  ++ +  N   PWL+ GDFN
Sbjct: 364 WTTMRGLIDNPTTPWLMAGDFN 385


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