BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025821
         (854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144627.1| PREDICTED: RING-H2 finger protein ATL18-like...    94   4e-17
gb|AFK48359.1| unknown [Lotus japonicus]                               91   3e-16
ref|NP_178507.1| RING/U-box domain-containing protein [Arabidops...    80   8e-13
gb|AEQ19306.1| RING zinc finger protein [Brassica napus]               79   1e-12
ref|XP_002885748.1| hypothetical protein ARALYDRAFT_480074 [Arab...    79   2e-12

>ref|XP_004144627.1| PREDICTED: RING-H2 finger protein ATL18-like [Cucumis sativus]
           gi|449500186|ref|XP_004161028.1| PREDICTED: RING-H2
           finger protein ATL18-like [Cucumis sativus]
          Length = 125

 Score = 94.0 bits (232), Expect = 4e-17
 Identities = 59/118 (50%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
 Frame = +3

Query: 75  ISRVVFYTCVYSPFLQIKQALISLLMQYLIQPTKS--EAASLFHNENIPVVRFEELEYCT 248
           ++ +VF TCV+ P  Q+K A IS +   L   T      ASL     + V RFEEL+   
Sbjct: 10  MATIVFLTCVWIPLSQLKAA-ISSMFDILSGRTCQMLTTASLPCEVKLLVCRFEELQRAV 68

Query: 249 CSSERRVDDQCSVCLGEFRREEEVSQLG-CGHVFHVSCIRSWLQCNRFTCPLCRSPIF 419
            S E    + CSVCL EF RE  VSQL  C HVFH+ CI SWLQ N+FTCPLCRS IF
Sbjct: 69  GSEE----EICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSFIF 122


>gb|AFK48359.1| unknown [Lotus japonicus]
          Length = 137

 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
 Frame = +3

Query: 60  QSRLYISRVVFYTCVYSPFLQIKQALISLLMQYLIQPTKSEAASLFHNENIPVVRFEELE 239
           QS+L++  +VFYTC+  P  ++K AL SL   +    +K     L    ++PV RFE+L 
Sbjct: 8   QSQLWVVTIVFYTCILIPLKELKGALASLFGLF----SKDVVEFLAVISSLPVARFEDLR 63

Query: 240 YCTCSSERRVDDQ-----CSVCLGEFRREEEVSQLGC-GHVFHVSCIRSWLQCNRFTCPL 401
              C  E   DD+     CS+CL EF  E+ VS+L   GHVFH++CI  WL   +F+CPL
Sbjct: 64  R-QCCCEGGDDDELREKICSICLVEFEGEDAVSKLERRGHVFHLNCIEQWLDRCQFSCPL 122

Query: 402 CRSPIF 419
           CRS +F
Sbjct: 123 CRSFLF 128


>ref|NP_178507.1| RING/U-box domain-containing protein [Arabidopsis thaliana]
           gi|42570685|ref|NP_973416.1| RING/U-box
           domain-containing protein [Arabidopsis thaliana]
           gi|11692878|gb|AAG40042.1|AF324691_1 T23O15.13
           [Arabidopsis thaliana]
           gi|11908040|gb|AAG41449.1|AF326867_1 putative RING zinc
           finger protein [Arabidopsis thaliana]
           gi|12642858|gb|AAK00371.1|AF339689_1 putative RING zinc
           finger protein [Arabidopsis thaliana]
           gi|4689478|gb|AAD27914.1| putative RING zinc finger
           protein [Arabidopsis thaliana]
           gi|330250717|gb|AEC05811.1| RING/U-box domain-containing
           protein [Arabidopsis thaliana]
           gi|330250718|gb|AEC05812.1| RING/U-box domain-containing
           protein [Arabidopsis thaliana]
          Length = 162

 Score = 79.7 bits (195), Expect = 8e-13
 Identities = 31/82 (37%), Positives = 54/82 (65%)
 Frame = +3

Query: 213 PVVRFEELEYCTCSSERRVDDQCSVCLGEFRREEEVSQLGCGHVFHVSCIRSWLQCNRFT 392
           P +RFE L    C  +++ D++CSVCL +F+ + E+++L CGH+FH +C+  W+     T
Sbjct: 85  PTLRFESL----CRCKKQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNIT 140

Query: 393 CPLCRSPIFLVKQGKHSSMSLY 458
           CPLCR+P+ +V +    S +++
Sbjct: 141 CPLCRTPLVVVPEDHQLSSNVW 162


>gb|AEQ19306.1| RING zinc finger protein [Brassica napus]
          Length = 160

 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 30/71 (42%), Positives = 48/71 (67%)
 Frame = +3

Query: 213 PVVRFEELEYCTCSSERRVDDQCSVCLGEFRREEEVSQLGCGHVFHVSCIRSWLQCNRFT 392
           P V+FE L    C  +++ D++CSVCL +F  + E+++L CGH+FH +C+  W+     T
Sbjct: 82  PTVKFESL----CKCKKQADNECSVCLSKFEEDSEINKLKCGHLFHKTCLEKWIDYWNIT 137

Query: 393 CPLCRSPIFLV 425
           CPLCR+P+ +V
Sbjct: 138 CPLCRTPLVVV 148


>ref|XP_002885748.1| hypothetical protein ARALYDRAFT_480074 [Arabidopsis lyrata subsp.
           lyrata] gi|297331588|gb|EFH62007.1| hypothetical protein
           ARALYDRAFT_480074 [Arabidopsis lyrata subsp. lyrata]
          Length = 161

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 31/82 (37%), Positives = 53/82 (64%)
 Frame = +3

Query: 213 PVVRFEELEYCTCSSERRVDDQCSVCLGEFRREEEVSQLGCGHVFHVSCIRSWLQCNRFT 392
           P +RFE L    C  +++ D++CSVCL +F  + E+++L CGH+FH +C+  W+     T
Sbjct: 84  PTLRFESL----CRCKKQEDNECSVCLSKFEGDSEINKLKCGHLFHKTCLEKWIDYWNIT 139

Query: 393 CPLCRSPIFLVKQGKHSSMSLY 458
           CPLCR+P+ +V +    S +++
Sbjct: 140 CPLCRTPLVVVAEDHQLSSNVW 161