BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025736
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   151   2e-45
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                145   1e-42
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   149   9e-42
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...   144   1e-41
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   120   2e-41

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  151 bits (381), Expect(2) = 2e-45
 Identities = 74/192 (38%), Positives = 114/192 (59%)
 Frame = +3

Query: 3    KNILPHPKCSKTRITHLCFADDILVFSKGSIDSVQAIKDILSSFTAATGLNMNLSKSSFL 182
            K I  HP+C    +THLCFADDI+VFS G+  S+Q    I   F A + L ++L KS+  
Sbjct: 832  KKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIF 891

Query: 183  TGSMISDDGVALANMLGVQVAEPPLKYLGLPLVSSRLKIRNCFPLIEKVTGRTSNWKSIH 362
               +  +   ++      ++   P+KYLGLPL++ R+   +  PL+EK+  R ++W +  
Sbjct: 892  MAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRF 951

Query: 363  LSHVGRLQLIISVLSSFHSYWARTFLLPKSVLLKVSRICIKFLWSGPQMASKMHQTSREN 542
            LS  GRLQLI SVLSS  ++W   F LPK+ L ++ ++   FLWSGP + +K  + +   
Sbjct: 952  LSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSE 1011

Query: 543  LIYIKQEGGLGI 578
            +  +K+EGGLG+
Sbjct: 1012 VCKLKEEGGLGL 1023



 Score = 58.5 bits (140), Expect(2) = 2e-45
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
 Frame = +1

Query: 601  EGALCGLVFKIARREHNLWNCWIWEEQIKSKIFWTMDIPKDC-SWSWRSILKSRKFAQKF 777
            E +L  L+++I     +LW  W+ +  I+ + FW++       SW WR ILK R  A+ F
Sbjct: 1031 EVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLF 1090

Query: 778  TKYILAGGNQTYLWHDIWCMNAPLLRN--SEASTLFSFSENARVSELIDNGR 927
             +  +  G  T  WHD WC    L ++  S  +       NA V+E+++  R
Sbjct: 1091 HRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHR 1142


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  145 bits (367), Expect(2) = 1e-42
 Identities = 73/208 (35%), Positives = 122/208 (58%), Gaps = 3/208 (1%)
 Frame = +3

Query: 3   KNILPHPKCSKTRITHLCFADDILVFSKGSIDSVQAIKDILSSFTAATGLNMNLSKSSFL 182
           +NI  HPKC K  +THLCFADD++VF  G   SV+ + +I   F   +GL+++L KS+  
Sbjct: 258 RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLY 317

Query: 183 TGSMISDDGVALANMLGVQVAEPPLKYLGLPLVSSRLKIRNCFPLIEKVTGRTSNWKSIH 362
              +   +   + +       + P++YLGLPL++ ++   +  PL++KV  + S+W +  
Sbjct: 318 LAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARS 377

Query: 363 LSHVGRLQLIISVLSSFHSYWARTFLLPKSVLLKVSRICIKFLWSGPQMASKMHQTSREN 542
           LS+ GRL LI SV+ S  ++W   + LP   + ++ ++C  FLWSGP++  K  + +  +
Sbjct: 378 LSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTS 437

Query: 543 LIYIKQEGGLGIVDPLIWNRG---RIVW 617
           L  +KQEGGLGI   L  N+    +++W
Sbjct: 438 LCKLKQEGGLGIKSLLEANKVSCLKLIW 465



 Score = 54.7 bits (130), Expect(2) = 1e-42
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 619 LVFKIARREHNLWNCWIWEEQIKSKIFWTMDIPKDC-SWSWRSILKSRKFAQKFTKYILA 795
           L++++  R+ +LW  W+W   I+   FW+ +      SW W+ +LK R  A+   K  + 
Sbjct: 463 LIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIK 522

Query: 796 GGNQTYLWHDIW 831
            G+ T  W+D W
Sbjct: 523 SGSSTSFWYDNW 534


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  149 bits (376), Expect(2) = 9e-42
 Identities = 70/187 (37%), Positives = 112/187 (59%)
 Frame = +3

Query: 18  HPKCSKTRITHLCFADDILVFSKGSIDSVQAIKDILSSFTAATGLNMNLSKSSFLTGSMI 197
           HPKC    +THLCFADD+++ + G + SV  I ++++ F   +GL +N+ K++  T  + 
Sbjct: 95  HPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINMEKTTLYTAGVS 154

Query: 198 SDDGVALANMLGVQVAEPPLKYLGLPLVSSRLKIRNCFPLIEKVTGRTSNWKSIHLSHVG 377
             +   + +     + + P++YLGLPLV+ RL   +  PL E++  R   W S +LS  G
Sbjct: 155 DHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAG 214

Query: 378 RLQLIISVLSSFHSYWARTFLLPKSVLLKVSRICIKFLWSGPQMASKMHQTSRENLIYIK 557
           RL LI SVL S  ++W   F LP + L +++ IC  FLWSGP++  +  + S +++   K
Sbjct: 215 RLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPK 274

Query: 558 QEGGLGI 578
           QEGGLG+
Sbjct: 275 QEGGLGL 281



 Score = 48.1 bits (113), Expect(2) = 9e-42
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +1

Query: 619 LVFKIARREHNLWNCWIWEEQIKSKIFWTMDIPKDC-SWSWRSILKSRKFAQKFTKYILA 795
           L++++   + +LW  W     +K + FW++       SW W+ +LK R+ A+ F++  + 
Sbjct: 295 LIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEVN 354

Query: 796 GGNQTYLWHDIWCMNAPLL--RNSEASTLFSFSENARVSELIDNGR 927
            G +T  W D W     L+             S N  V+E   N R
Sbjct: 355 NGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRR 400


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score =  144 bits (363), Expect(2) = 1e-41
 Identities = 72/208 (34%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
 Frame = +3

Query: 3    KNILPHPKCSKTRITHLCFADDILVFSKGSIDSVQAIKDILSSFTAATGLNMNLSKSSFL 182
            +NI  HPKC K  +THLCFADD++VF  G   SV+ + +I   F   +GL+++L KS+  
Sbjct: 827  RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLY 886

Query: 183  TGSMISDDGVALANMLGVQVAEPPLKYLGLPLVSSRLKIRNCFPLIEKVTGRTSNWKSIH 362
               +   +   + +       + P++YLG PL++ ++   +  PL++KV  + S+W +  
Sbjct: 887  LAEVSELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARS 946

Query: 363  LSHVGRLQLIISVLSSFHSYWARTFLLPKSVLLKVSRICIKFLWSGPQMASKMHQTSREN 542
            LS+ GRL LI SV+ S  ++W   + LP   + ++ ++C  FLWSGP++  K  + +  +
Sbjct: 947  LSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTS 1006

Query: 543  LIYIKQEGGLGIVDPLIWNRG---RIVW 617
            L  +KQEGGLGI   L  N+    +++W
Sbjct: 1007 LCKLKQEGGLGIKSLLEANKVSCLKLIW 1034



 Score = 52.8 bits (125), Expect(2) = 1e-41
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 619  LVFKIARREHNLWNCWIWEEQIKSKIFWTMDIPKDC-SWSWRSILKSRKFAQKFTKYILA 795
            L++++  R+ +LW  W+W   I+   FW+ +      SW W+ +L  R  A+   K  + 
Sbjct: 1032 LIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIK 1091

Query: 796  GGNQTYLWHDIW 831
             G+ T  W+D W
Sbjct: 1092 SGSSTSFWYDNW 1103


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  120 bits (300), Expect(2) = 2e-41
 Identities = 64/167 (38%), Positives = 97/167 (58%)
 Frame = +3

Query: 102 VQAIKDILSSFTAATGLNMNLSKSSFLTGSMISDDGVALANMLGVQVAEPPLKYLGLPLV 281
           V  I+ +L+ F   +GL  N +KS      +++ +   + ++LG +  E P+KYLG+PL+
Sbjct: 5   VGMIRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLL 64

Query: 282 SSRLKIRNCFPLIEKVTGRTSNWKSIHLSHVGRLQLIISVLSSFHSYWARTFLLPKSVLL 461
           SSRLK   C  L++++T +  +W    LS+ GR+QLI SVL S   YWA  FLLP  V+ 
Sbjct: 65  SSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIK 124

Query: 462 KVSRICIKFLWSGPQMASKMHQTSRENLIYIKQEGGLGIVDPLIWNR 602
            V +I   FLWSG  M +   + + + +   K+EGGLGI     WN+
Sbjct: 125 NVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNK 171



 Score = 76.6 bits (187), Expect(2) = 2e-41
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
 Frame = +1

Query: 649 NLWNCWIWEEQIKSKIFWTMDIPKDCSWSWRSILKSRKFAQKFTKYILAGGNQTYLWHDI 828
           ++W+ WI    ++ + FWT+  P++CSW+W  ILK R  A    KYI+  G  T LW D 
Sbjct: 188 SIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDN 247

Query: 829 WCMNAPLLRNSEASTLF--SFSENARVSELIDNGRW 930
           W  ++PL  +     ++    ++NA+V+ LI N  W
Sbjct: 248 WHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEW 283