BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025717
         (656 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containi...    83   5e-14
emb|CBI37948.3| unnamed protein product [Vitis vinifera]               83   5e-14
emb|CAN69936.1| hypothetical protein VITISV_038780 [Vitis vinifera]    83   5e-14
ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containi...    80   3e-13
ref|NP_195209.2| pentatricopeptide repeat-containing protein [Ar...    75   1e-11

>ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Vitis vinifera]
          Length = 1115

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = -1

Query: 656 LYSQAKTEGVVPNLIICKCLIGMCLRRFEKAYSLGDPVFSLKSGNPQIDNKW 501
           + SQA+ + V PNL++C+CL+GMCLRRFEKA +LG+PV S  SG PQIDNKW
Sbjct: 831 ILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKW 882


>emb|CBI37948.3| unnamed protein product [Vitis vinifera]
          Length = 1550

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = -1

Query: 656  LYSQAKTEGVVPNLIICKCLIGMCLRRFEKAYSLGDPVFSLKSGNPQIDNKW 501
            + SQA+ + V PNL++C+CL+GMCLRRFEKA +LG+PV S  SG PQIDNKW
Sbjct: 1266 ILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKW 1317


>emb|CAN69936.1| hypothetical protein VITISV_038780 [Vitis vinifera]
          Length = 1206

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = -1

Query: 656  LYSQAKTEGVVPNLIICKCLIGMCLRRFEKAYSLGDPVFSLKSGNPQIDNKW 501
            + SQA+ + V PNL++C+CL+GMCLRRFEKA +LG+PV S  SG PQIDNKW
Sbjct: 922  ILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKW 973


>ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Glycine max]
          Length = 1092

 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 35/52 (67%), Positives = 42/52 (80%)
 Frame = -1

Query: 656 LYSQAKTEGVVPNLIICKCLIGMCLRRFEKAYSLGDPVFSLKSGNPQIDNKW 501
           L S AK +GVVPNLI+C+C+IGMC RRFEKA  +G+PV S  SG PQ+DNKW
Sbjct: 799 LLSLAKKDGVVPNLIMCRCIIGMCQRRFEKACFVGEPVLSFDSGRPQVDNKW 850


>ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g34830, chloroplastic; Flags: Precursor
           gi|332661026|gb|AEE86426.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 1089

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 33/52 (63%), Positives = 41/52 (78%)
 Frame = -1

Query: 656 LYSQAKTEGVVPNLIICKCLIGMCLRRFEKAYSLGDPVFSLKSGNPQIDNKW 501
           L SQAK +GV PNLI+C+C+  +C RRFEKA + G+PV S KSG PQI+NKW
Sbjct: 806 LLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKW 857