BLASTX nr result
ID: Coptis25_contig00025664
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00025664
(335 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi... 156 1e-36
ref|XP_002328265.1| predicted protein [Populus trichocarpa] gi|2... 140 1e-31
ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. l... 137 1e-30
ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar... 136 2e-30
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,... 135 3e-30
>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
protein product [Vitis vinifera]
Length = 878
Score = 156 bits (395), Expect = 1e-36
Identities = 78/110 (70%), Positives = 91/110 (82%)
Frame = +1
Query: 4 MGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGK 183
MGSFG +PN VI+NTLIS FC+EG AE LVE+MRE+GL P+ VTFN RISALCS GK
Sbjct: 212 MGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGK 271
Query: 184 VLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVES 333
+LE RIF DMQ+ D++LGLPRPN+ TFN+MLEGFCKE MLEEA+ LVES
Sbjct: 272 ILEASRIFRDMQI-DEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVES 320
Score = 67.8 bits (164), Expect = 9e-10
Identities = 37/105 (35%), Positives = 56/105 (53%)
Frame = +1
Query: 16 GCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEG 195
G EPN+ FNT++ CK G + A M++ M +G+ P+ VT++ + CS GKVL+
Sbjct: 360 GIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKA 419
Query: 196 YRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVE 330
I +M + PN T NI+L KE + EAE L++
Sbjct: 420 NNILHEMMRRGCS-----PNTYTCNILLHSLWKEGRIFEAEKLLQ 459
Score = 63.5 bits (153), Expect = 2e-08
Identities = 33/101 (32%), Positives = 56/101 (55%)
Frame = +1
Query: 25 PNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEGYRI 204
PN+ FN ++ FCKEG + A+ LVE M+ NG ++N + L GK+LE
Sbjct: 293 PNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLA 352
Query: 205 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLV 327
+M D G+ PN+ +FN +++G CK ++ +A +++
Sbjct: 353 LKEMV----DKGI-EPNIYSFNTVMDGLCKNGLISDARMIM 388
Score = 58.5 bits (140), Expect = 5e-07
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Frame = +1
Query: 16 GCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEG 195
GC PN N L+ KEG + AE L++KM E + VT N I LC GK+ E
Sbjct: 430 GCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEA 489
Query: 196 YRIFSDM---------QMKDDDLGLP---------RPNLITFNIMLEGFCKERMLEEA 315
I M + + +GL P+LIT++I++ G CK L+EA
Sbjct: 490 VEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEA 547
Score = 56.2 bits (134), Expect = 3e-06
Identities = 30/102 (29%), Positives = 56/102 (54%)
Frame = +1
Query: 25 PNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEGYRI 204
P+ +I++T I FCK G + A +++ M + G + + T+N I L S ++ E Y +
Sbjct: 561 PDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGL 620
Query: 205 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVE 330
DM+ K G+ PN+ T+N M+ C+ +++A L++
Sbjct: 621 LDDMKEK----GI-TPNICTYNNMISCLCEGGRIKDATSLLD 657
Score = 55.1 bits (131), Expect = 6e-06
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = +1
Query: 16 GCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEG 195
GC ++ +N+LI + + L++ M+E G++PN T+N IS LC G++ +
Sbjct: 593 GCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDA 652
Query: 196 YRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCK 294
+ +M K G+ PN+ +F ++++ FCK
Sbjct: 653 TSLLDEMLQK----GI-SPNISSFRLLIKAFCK 680
>ref|XP_002328265.1| predicted protein [Populus trichocarpa] gi|222837780|gb|EEE76145.1|
predicted protein [Populus trichocarpa]
Length = 742
Score = 140 bits (353), Expect = 1e-31
Identities = 71/110 (64%), Positives = 85/110 (77%)
Frame = +1
Query: 1 KMGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVG 180
+M G PN V++NTLIS FCKEG AE LV++MR++GLSP+ VTFN RISALCS G
Sbjct: 116 EMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSG 175
Query: 181 KVLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVE 330
KVLE RIF DMQ+ D+ LGLP+PN+IT+N+ML GFCKE MLEEA L E
Sbjct: 176 KVLEASRIFRDMQI-DEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFE 224
Score = 65.1 bits (157), Expect = 6e-09
Identities = 33/102 (32%), Positives = 61/102 (59%)
Frame = +1
Query: 22 EPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEGYR 201
+PN++ +N ++ FCKEG + A L EKM+ + N ++N + L +GK+LE
Sbjct: 197 QPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQL 256
Query: 202 IFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLV 327
+ +M D+G+ PN+ ++NI+++G CK +L +A +L+
Sbjct: 257 VLKEMV----DMGM-EPNVYSYNIVMDGLCKNGVLFDARMLM 293
Score = 62.4 bits (150), Expect = 4e-08
Identities = 35/109 (32%), Positives = 51/109 (46%)
Frame = +1
Query: 4 MGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGK 183
M + G P FN LI C G + A L +KM E G PN +F + C G
Sbjct: 47 MVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGF 106
Query: 184 VLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVE 330
+G + +M+ LG PN + +N ++ FCKE ++AE LV+
Sbjct: 107 TSKGLELLGEMRR----LGF-SPNKVVYNTLISSFCKEGKTDDAEKLVD 150
Score = 60.8 bits (146), Expect = 1e-07
Identities = 37/110 (33%), Positives = 56/110 (50%)
Frame = +1
Query: 1 KMGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVG 180
+M G EPN+ +N ++ CK G + A ML+ M +G+ P+ VT+ + C G
Sbjct: 260 EMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTG 319
Query: 181 KVLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVE 330
KV E + +M M+D PN T NI+L KE + EAE L++
Sbjct: 320 KVSEANNVLREM-MRDG----CSPNNYTCNILLYSLWKEGRISEAEELLQ 364
>ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 874
Score = 137 bits (344), Expect = 1e-30
Identities = 68/110 (61%), Positives = 85/110 (77%)
Frame = +1
Query: 4 MGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGK 183
M SFG PN V++NT++S FC+EG +E LVEKMRE GL P+ VTFN RISALC GK
Sbjct: 208 MESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGK 267
Query: 184 VLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVES 333
VL+ RIFSDM++ D+ LGLPRPN IT+N+ML+GFCK +LE+A+ L ES
Sbjct: 268 VLDASRIFSDMEL-DEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES 316
Score = 60.5 bits (145), Expect = 1e-07
Identities = 36/104 (34%), Positives = 56/104 (53%)
Frame = +1
Query: 16 GCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEG 195
G P++ +N L+ CK G + A+ +V M+ NG+SP+ VT+ C + CSVGKV
Sbjct: 356 GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAA 415
Query: 196 YRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLV 327
+ +M M+++ L PN T NI+L + EAE L+
Sbjct: 416 KSLLQEM-MRNNCL----PNAYTCNILLHSLWNMGRISEAEELL 454
Score = 58.9 bits (141), Expect = 4e-07
Identities = 32/101 (31%), Positives = 56/101 (55%)
Frame = +1
Query: 25 PNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEGYRI 204
PN + +N ++ FCK G + A+ L E +REN + ++N + L GK +E +
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETV 348
Query: 205 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLV 327
QM D +G P++ ++NI+++G CK ML +A+ +V
Sbjct: 349 LK--QMIDKGIG---PSIYSYNILMDGLCKLGMLSDAKTIV 384
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/106 (29%), Positives = 54/106 (50%)
Frame = +1
Query: 16 GCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEG 195
GC ++ +N+LI + + L+++MRE G+SPN T+N I LC GKV +
Sbjct: 589 GCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDA 648
Query: 196 YRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVES 333
+ +M K+ PN+ +F ++ FCK + A+ + E+
Sbjct: 649 TNLLDEMMQKN-----IAPNVFSFKYLIGAFCKVPDFDMAQEVFET 689
>ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical
protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 136 bits (343), Expect = 2e-30
Identities = 68/110 (61%), Positives = 85/110 (77%)
Frame = +1
Query: 4 MGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGK 183
M SFG PN VI+NT++S FC+EG +E +VEKMRE GL P+ VTFN RISALC GK
Sbjct: 208 MESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGK 267
Query: 184 VLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVES 333
VL+ RIFSDM++ D+ LGLPRPN IT+N+ML+GFCK +LE+A+ L ES
Sbjct: 268 VLDASRIFSDMEL-DEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES 316
Score = 60.8 bits (146), Expect = 1e-07
Identities = 37/109 (33%), Positives = 58/109 (53%)
Frame = +1
Query: 1 KMGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVG 180
+M G P++ +N L+ CK G + A+ +V M+ NG+ P+ VT+ C + CSVG
Sbjct: 351 QMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVG 410
Query: 181 KVLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLV 327
KV + +M M+++ L PN T NI+L K + EAE L+
Sbjct: 411 KVDAAKSLLQEM-MRNNCL----PNAYTCNILLHSLWKMGRISEAEELL 454
Score = 60.1 bits (144), Expect = 2e-07
Identities = 32/101 (31%), Positives = 56/101 (55%)
Frame = +1
Query: 25 PNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEGYRI 204
PN + +N ++ FCK G + A+ L E +REN + ++N + L GK +E +
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETV 348
Query: 205 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLV 327
QM D +G P++ ++NI+++G CK ML +A+ +V
Sbjct: 349 LK--QMTDKGIG---PSIYSYNILMDGLCKLGMLSDAKTIV 384
Score = 56.6 bits (135), Expect = 2e-06
Identities = 30/106 (28%), Positives = 54/106 (50%)
Frame = +1
Query: 16 GCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEG 195
GC ++ +N+LI + + L+++M+E G+SPN T+N I LC KV +
Sbjct: 589 GCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDA 648
Query: 196 YRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVES 333
+ +M K+ PN+ +F ++E FCK + A+ + E+
Sbjct: 649 TNLLDEMMQKN-----IAPNVFSFKYLIEAFCKVPDFDMAQEVFET 689
>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 874
Score = 135 bits (341), Expect = 3e-30
Identities = 68/111 (61%), Positives = 85/111 (76%)
Frame = +1
Query: 1 KMGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVG 180
+M + G PN V++NTLIS FCKEG AE LV+KMRE+GL P+ TFN RISALC G
Sbjct: 207 QMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSG 266
Query: 181 KVLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVES 333
K+LE RIF DMQ+ D++LGLP PN+IT+ +ML GFCKE MLEEA+ LV++
Sbjct: 267 KILEASRIFRDMQI-DEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDT 316
Score = 62.4 bits (150), Expect = 4e-08
Identities = 35/110 (31%), Positives = 56/110 (50%)
Frame = +1
Query: 1 KMGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVG 180
+M G EP++ +N ++ CK G + A ML+ M NG+ P+ VT++ + CS G
Sbjct: 351 EMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKG 410
Query: 181 KVLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVE 330
KV E + +M + PN T N++L KE + EAE L++
Sbjct: 411 KVFEANNLLHEMISNNCS-----PNTYTCNVLLHSLWKEGRISEAENLLQ 455
Score = 62.0 bits (149), Expect = 5e-08
Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +1
Query: 25 PNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEGYRI 204
PN++ + ++ FCKEG + A+ LV+ M+ N N ++N + L GK+LE + +
Sbjct: 289 PNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIV 348
Query: 205 FSDMQMKDDDLGLP-RPNLITFNIMLEGFCKERMLEEAEVLV 327
+M LG+ P++ ++NI+++G CK ML +A +L+
Sbjct: 349 LKEM------LGIGIEPDIYSYNIVMDGLCKNGMLSDARMLM 384
Score = 58.5 bits (140), Expect = 5e-07
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Frame = +1
Query: 1 KMGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVG 180
+M S C PN N L+ KEG + AE L++KM E G + VT N I+ALC+ G
Sbjct: 421 EMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNG 480
Query: 181 KVLEGYRIFSDM----------------QMKDDDLGLPR--PNLITFNIMLEGFCKERML 306
++ + I + M + DD + + P+L+T++ ++ G CK L
Sbjct: 481 QLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRL 540
Query: 307 EEAE 318
++A+
Sbjct: 541 DDAK 544
Score = 57.8 bits (138), Expect = 9e-07
Identities = 32/102 (31%), Positives = 47/102 (46%)
Frame = +1
Query: 25 PNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVGKVLEGYRI 204
P FN LI C G++ A L +KM G PN TF + C G +G +
Sbjct: 145 PEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLEL 204
Query: 205 FSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVE 330
M+ +G+ PN + +N ++ FCKE +AE LV+
Sbjct: 205 LGQMR----TMGI-LPNNVLYNTLISSFCKEGKTHDAEKLVD 241
Score = 55.5 bits (132), Expect = 5e-06
Identities = 30/110 (27%), Positives = 57/110 (51%)
Frame = +1
Query: 1 KMGSFGCEPNMVIFNTLISCFCKEGNVGVAEMLVEKMRENGLSPNFVTFNCRISALCSVG 180
+M S G +P+ I++T I FC+EG + A +++ M + G + T+N I L S
Sbjct: 549 EMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKN 608
Query: 181 KVLEGYRIFSDMQMKDDDLGLPRPNLITFNIMLEGFCKERMLEEAEVLVE 330
++ E Y + +M+ K P++ T+N ML C+ + +A +++
Sbjct: 609 QIFELYGLIDEMREKG-----VSPDVCTYNHMLNCLCEGGRINDAPSVLD 653