BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025644
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containi...   124   6e-27
ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|2...   122   4e-26
ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi...   121   5e-26
ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   120   9e-26
ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat...   120   9e-26

>ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  124 bits (312), Expect = 6e-27
 Identities = 53/111 (47%), Positives = 86/111 (77%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           + +F++ P+K   TW+AMI GY +A   A A+++F +MQ+ GV PD+IT+VS+L +CA L
Sbjct: 287 KKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADL 346

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGMRER 1
           GALELG+W+  Y+E++ + R++ +CNA+I+M+AKCG +D+A+ VF+ M+ R
Sbjct: 347 GALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVR 397



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/107 (25%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
 Frame = -2

Query: 327 MFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALLGA 148
           +F +M ++T+ +W +MIVG     R  EA+ +F +M   GV PD +  + +L +C+  G 
Sbjct: 390 VFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGL 449

Query: 147 LELGEWVRLYVEKR-KLDRNITVCNAIINMYAKCGSIDKAMAVFKGM 10
           ++ G +    +E    +   I     +++M ++ G +++A+   + M
Sbjct: 450 VDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAM 496


>ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|222854636|gb|EEE92183.1|
           predicted protein [Populus trichocarpa]
          Length = 487

 Score =  122 bits (305), Expect = 4e-26
 Identities = 54/111 (48%), Positives = 83/111 (74%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R +F++M      +W+AMI GY +  R ++A+++F +MQ+ GV PD+IT+VS+L +C  L
Sbjct: 69  RKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGL 128

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGMRER 1
           GALELG+WV  YVEK ++ +N+ + NA+I+M+AKCG +DKA  +F+ MRER
Sbjct: 129 GALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRER 179


>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  121 bits (304), Expect = 5e-26
 Identities = 55/111 (49%), Positives = 80/111 (72%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R++F +M  KT+ +W A++ GY +    A+AL  F +MQ+ G++PD+I++VS+L  CA L
Sbjct: 203 RAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQL 262

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGMRER 1
           GALELG+W+ +Y +K    RNI VCNA+I MYAKCGSID+   +F  M+ER
Sbjct: 263 GALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER 313



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R +F+ M  + + +W+ MIVG     R  EA+ +F +MQ A ++P  IT V +L +CA  
Sbjct: 304 RRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHA 363

Query: 153 GALELGEWVRLYVEKRKLDRNITV----CNAIINMYAKCGSIDKAMAVFKGM 10
           G L  G     Y E  K D NI         ++N+    G +D+A+ + K M
Sbjct: 364 GLLNEG---LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKM 412


>ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  120 bits (302), Expect = 9e-26
 Identities = 55/111 (49%), Positives = 80/111 (72%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R+ F+ MP K   +W AMI GY +++R  EAL +F  MQ   VKPD+ T+VS+L +CA L
Sbjct: 326 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 385

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGMRER 1
           GALELGEW+R Y+++ K+  ++ V NA+I+MY KCG +DKA ++F+ M +R
Sbjct: 386 GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR 436



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 39/111 (35%), Positives = 65/111 (58%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R +F+  P   + TWN +I  YN+  +  E+  +F  M+   V P  +T+V +L +C+ L
Sbjct: 194 RGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKL 253

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGMRER 1
             L  G+ V  YV+  K++ N+ + NA+I+MYA CG +D A+ +F+ M  R
Sbjct: 254 KDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR 304



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 37/105 (35%), Positives = 55/105 (52%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R +F+++P   L  WN MI GY++   P   +S++ +M   GVKPD+ T   +       
Sbjct: 93  RRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRD 152

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVF 19
            ALE G  +  +V K  L  N+ V  A++ MY  CG +D A  VF
Sbjct: 153 IALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 197



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
 Frame = -2

Query: 330 SMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALLG 151
           S+F +M  +   TW AMIVG        +AL +F  M  A + PD+IT + +L +C   G
Sbjct: 428 SIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTG 487

Query: 150 ALELG-EWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGM 10
            ++ G ++      +  ++ NI     ++++ A+ G + +A  V + M
Sbjct: 488 LVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENM 535


>ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  120 bits (302), Expect = 9e-26
 Identities = 55/111 (49%), Positives = 80/111 (72%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R+ F+ MP K   +W AMI GY +++R  EAL +F  MQ   VKPD+ T+VS+L +CA L
Sbjct: 305 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 364

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGMRER 1
           GALELGEW+R Y+++ K+  ++ V NA+I+MY KCG +DKA ++F+ M +R
Sbjct: 365 GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR 415



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 39/111 (35%), Positives = 65/111 (58%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R +F+  P   + TWN +I  YN+  +  E+  +F  M+   V P  +T+V +L +C+ L
Sbjct: 173 RGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKL 232

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGMRER 1
             L  G+ V  YV+  K++ N+ + NA+I+MYA CG +D A+ +F+ M  R
Sbjct: 233 KDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR 283



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 37/105 (35%), Positives = 55/105 (52%)
 Frame = -2

Query: 333 RSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALL 154
           R +F+++P   L  WN MI GY++   P   +S++ +M   GVKPD+ T   +       
Sbjct: 72  RRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRD 131

Query: 153 GALELGEWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVF 19
            ALE G  +  +V K  L  N+ V  A++ MY  CG +D A  VF
Sbjct: 132 IALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 176



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
 Frame = -2

Query: 330 SMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPDQITVVSILHSCALLG 151
           S+F +M  +   TW AMIVG        +AL +F  M  A + PD+IT + +L +C   G
Sbjct: 407 SIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTG 466

Query: 150 ALELG-EWVRLYVEKRKLDRNITVCNAIINMYAKCGSIDKAMAVFKGM 10
            ++ G ++      +  ++ NI     ++++ A+ G + +A  V + M
Sbjct: 467 LVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENM 514