BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025576
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi...    61   2e-13
ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi...    54   2e-12
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,...    54   1e-11
ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containi...    52   2e-11
ref|NP_196692.1| pentatricopeptide repeat-containing protein [Ar...    47   2e-09

>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
           gi|449503560|ref|XP_004162063.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score = 61.2 bits (147), Expect(2) = 2e-13
 Identities = 29/51 (56%), Positives = 44/51 (86%)
 Frame = +1

Query: 130 REIRSSIIKKAQAMSDVLKISKDPRVLIKMKNYSENSVASANELIDDIKEE 282
           R  R+SI++KA+AMS++LK+ KDPR L+K ++ SE++V SAN+LIDDIK++
Sbjct: 559 RARRTSIMRKAEAMSEMLKVCKDPRELVKRRSPSEDAVFSANKLIDDIKKK 609



 Score = 39.3 bits (90), Expect(2) = 2e-13
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +3

Query: 9   EDLKKSGMTMMAQKLSSRMSSFPH*ARLPDTYIEGGD 119
           ++  K G+T MA KL   MSS PH  +LPDTY +  D
Sbjct: 520 DEFMKRGLTKMASKLQEMMSSVPHSEKLPDTYNQTPD 556


>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
           gi|296081989|emb|CBI20994.3| unnamed protein product
           [Vitis vinifera]
          Length = 597

 Score = 54.3 bits (129), Expect(2) = 2e-12
 Identities = 26/50 (52%), Positives = 39/50 (78%)
 Frame = +1

Query: 127 SREIRSSIIKKAQAMSDVLKISKDPRVLIKMKNYSENSVASANELIDDIK 276
           SR  ++SII++A+AMSD+LK   DPR L+K ++  EN+V  A++LI+DIK
Sbjct: 542 SRARKTSIIQRAEAMSDILKTCNDPRELVKRRSSFENTVLVADQLIEDIK 591



 Score = 42.7 bits (99), Expect(2) = 2e-12
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 15  LKKSGMTMMAQKLSSRMSSFPH*ARLPDTYIEGGDGQVSR 134
           L+K G+T MA+KL   M+S PH ++LP+TY   GDG  SR
Sbjct: 506 LRKRGLTEMARKLCDMMASVPHSSKLPNTY--SGDGDASR 543


>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 577

 Score = 53.9 bits (128), Expect(2) = 1e-11
 Identities = 26/53 (49%), Positives = 40/53 (75%)
 Frame = +1

Query: 121 ARSREIRSSIIKKAQAMSDVLKISKDPRVLIKMKNYSENSVASANELIDDIKE 279
           A  R  RSSI++KA+AMS +LK   DPR L+K+K+ S+N + SA +LI++I++
Sbjct: 520 ALRRARRSSILQKAEAMSKILKTCNDPRELVKLKSSSQNPITSAIQLIENIRK 572



 Score = 40.0 bits (92), Expect(2) = 1e-11
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +3

Query: 9   EDLKKSGMTMMAQKLSSRMSSFPH*ARLPDTYIEGGD 119
           ++L+K GM   A+KLS  MSS PH   LP+TY   GD
Sbjct: 483 DELRKRGMVERARKLSDMMSSVPHSTNLPNTYSVEGD 519


>ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score = 52.0 bits (123), Expect(2) = 2e-11
 Identities = 27/52 (51%), Positives = 37/52 (71%)
 Frame = +1

Query: 139 RSSIIKKAQAMSDVLKISKDPRVLIKMKNYSENSVASANELIDDIKEEDLVG 294
           R SII+KA+A SD+LK  KDP  L K ++ SEN+V+S N LI+DI+ +   G
Sbjct: 571 RKSIIRKAKAFSDMLKDCKDPSELRKHRSSSENTVSSTNSLIEDIERKRNTG 622



 Score = 41.2 bits (95), Expect(2) = 2e-11
 Identities = 21/33 (63%), Positives = 23/33 (69%)
 Frame = +3

Query: 12  DLKKSGMTMMAQKLSSRMSSFPH*ARLPDTYIE 110
           DLKK GMT MAQKL   MSS P+   LP+TY E
Sbjct: 530 DLKKQGMTEMAQKLCKLMSSVPYSPNLPNTYGE 562


>ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
           gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis
           thaliana] gi|110738090|dbj|BAF00978.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332004275|gb|AED91658.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score = 47.0 bits (110), Expect(2) = 2e-09
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = +1

Query: 130 REIRSSIIKKAQAMSDVLKISKDPRVLIKMKNYSENSVASANELIDDIKEED 285
           ++ R SI+ +A+AMSDVLK  ++PR L+KM+   + +V     LIDDI E +
Sbjct: 544 KDRRKSILHRAEAMSDVLKGCRNPRKLVKMRGSHKKAVGEDINLIDDINERN 595



 Score = 39.7 bits (91), Expect(2) = 2e-09
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +3

Query: 15  LKKSGMTMMAQKLSSRMSSFPH*ARLPDTYIEGGD 119
           L+  GM+ MA++LSS MSS PH  +LP+TY E  D
Sbjct: 505 LRSKGMSDMAKRLSSLMSSLPHSKKLPNTYREAVD 539