BLASTX nr result
ID: Coptis25_contig00025568
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025568 (383 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002321943.1| f-box family protein [Populus trichocarpa] g... 74 2e-11 ref|XP_003628780.1| F-box family protein [Medicago truncatula] g... 73 3e-11 ref|XP_003598679.1| F-box family protein [Medicago truncatula] g... 71 8e-11 ref|XP_003541682.1| PREDICTED: F-box protein At3g59000-like [Gly... 69 4e-10 ref|NP_001064084.1| Os10g0126800 [Oryza sativa Japonica Group] g... 67 1e-09 >ref|XP_002321943.1| f-box family protein [Populus trichocarpa] gi|222868939|gb|EEF06070.1| f-box family protein [Populus trichocarpa] Length = 360 Score = 73.6 bits (179), Expect = 2e-11 Identities = 42/96 (43%), Positives = 59/96 (61%) Frame = +2 Query: 74 MSHKKKLKKNDTGQNNEDRLSSLPDNILHKILDLLDTLYAVRSSILSKRWRDLWTCLSNL 253 M +++ ++ N DRLS LPD+I+HKIL L+D AV++S+LSKRWR LWT L++L Sbjct: 1 MENEEDKARSSCRSENIDRLSDLPDSIIHKILSLVDLRCAVQTSVLSKRWRFLWTSLTDL 60 Query: 254 NFNSTIDYEATNKHLNNKDEIFTKFVDQVFIHRDRS 361 NFN T + TN F +FV +V R+ S Sbjct: 61 NFNGTC-MDFTN------FVTFNRFVSRVLSTREDS 89 >ref|XP_003628780.1| F-box family protein [Medicago truncatula] gi|355522802|gb|AET03256.1| F-box family protein [Medicago truncatula] Length = 451 Score = 72.8 bits (177), Expect = 3e-11 Identities = 48/126 (38%), Positives = 63/126 (50%) Frame = +2 Query: 5 SSVSTFDSLISHVLSAMGKSNRQMSHKKKLKKNDTGQNNEDRLSSLPDNILHKILDLLDT 184 S T V+S G NR KK+ K N N+DR+S LPD IL IL L+T Sbjct: 42 SGALTASKFCKSVVSPAG--NRSFQMKKRRKNNHNHTENKDRISDLPDCILFHILSSLET 99 Query: 185 LYAVRSSILSKRWRDLWTCLSNLNFNSTIDYEATNKHLNNKDEIFTKFVDQVFIHRDRSC 364 +AV+++ILS RW +LW L L NS+ H + FTKFV +V RD S Sbjct: 100 KHAVQTTILSTRWNNLWKRLPTLRLNSS--------HFKTL-KSFTKFVSRVLSLRDDST 150 Query: 365 NIRTFH 382 + T + Sbjct: 151 ALHTLY 156 >ref|XP_003598679.1| F-box family protein [Medicago truncatula] gi|355487727|gb|AES68930.1| F-box family protein [Medicago truncatula] Length = 361 Score = 71.2 bits (173), Expect = 8e-11 Identities = 40/88 (45%), Positives = 53/88 (60%) Frame = +2 Query: 113 QNNEDRLSSLPDNILHKILDLLDTLYAVRSSILSKRWRDLWTCLSNLNFNSTIDYEATNK 292 +NNEDRLS LPD+ILH IL LLDT A ++SILS RW++L LS L +ST+ Y Sbjct: 21 ENNEDRLSDLPDSILHHILSLLDTKQAFQTSILSTRWKNLPKHLSTLRLSSTVFYSF--- 77 Query: 293 HLNNKDEIFTKFVDQVFIHRDRSCNIRT 376 + F K V ++ HRD ++ T Sbjct: 78 ------DSFMKSVSRILSHRDDLTSLHT 99 >ref|XP_003541682.1| PREDICTED: F-box protein At3g59000-like [Glycine max] Length = 306 Score = 68.9 bits (167), Expect = 4e-10 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Frame = +2 Query: 65 NRQMSHKKKLKKNDTGQNNE---DRLSSLPDNILHKILDLLDTLYAVRSSILSKRWRDLW 235 +R KK + + G+N + DR+S+LPD++L +++ +DT AV++ +LSKRW DL Sbjct: 92 DRISERKKNIAREVDGENEDHRPDRISALPDSLLFHMINFMDTKSAVQTCVLSKRWNDLS 151 Query: 236 TCLSNLNFNSTIDYEATNKHLNNKDEIFTKFVDQVFIHRDRS 361 CL+NL FNS + E D F KF V RD S Sbjct: 152 KCLTNLTFNSDLPSEGL-------DRSFKKFESWVLSSRDDS 186 >ref|NP_001064084.1| Os10g0126800 [Oryza sativa Japonica Group] gi|20042915|gb|AAM08743.1|AC025098_10 Unknown protein [Oryza sativa Japonica Group] gi|31429986|gb|AAP51963.1| F-box domain containing protein, expressed [Oryza sativa Japonica Group] gi|113638693|dbj|BAF25998.1| Os10g0126800 [Oryza sativa Japonica Group] Length = 454 Score = 67.4 bits (163), Expect = 1e-09 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 9/95 (9%) Frame = +2 Query: 122 EDRLSSLPDNILHKILDLLDTLYAVRSSILSKRWRDLWT---------CLSNLNFNSTID 274 EDRLS LP+ +LH+++ LD+ AVR+ +LS+RWRD+W C LN+ S D Sbjct: 61 EDRLSDLPEGVLHRVMSFLDSRQAVRTCVLSRRWRDVWRTVPRVHADFCDFTLNWTSD-D 119 Query: 275 YEATNKHLNNKDEIFTKFVDQVFIHRDRSCNIRTF 379 E + + +F +FV+++ RD + +IR+F Sbjct: 120 DEVDEAAVAEDEVVFNRFVNRLLELRDPNASIRSF 154