BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025568
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321943.1| f-box family protein [Populus trichocarpa] g...    74   2e-11
ref|XP_003628780.1| F-box family protein [Medicago truncatula] g...    73   3e-11
ref|XP_003598679.1| F-box family protein [Medicago truncatula] g...    71   8e-11
ref|XP_003541682.1| PREDICTED: F-box protein At3g59000-like [Gly...    69   4e-10
ref|NP_001064084.1| Os10g0126800 [Oryza sativa Japonica Group] g...    67   1e-09

>ref|XP_002321943.1| f-box family protein [Populus trichocarpa]
           gi|222868939|gb|EEF06070.1| f-box family protein
           [Populus trichocarpa]
          Length = 360

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 42/96 (43%), Positives = 59/96 (61%)
 Frame = +2

Query: 74  MSHKKKLKKNDTGQNNEDRLSSLPDNILHKILDLLDTLYAVRSSILSKRWRDLWTCLSNL 253
           M +++   ++     N DRLS LPD+I+HKIL L+D   AV++S+LSKRWR LWT L++L
Sbjct: 1   MENEEDKARSSCRSENIDRLSDLPDSIIHKILSLVDLRCAVQTSVLSKRWRFLWTSLTDL 60

Query: 254 NFNSTIDYEATNKHLNNKDEIFTKFVDQVFIHRDRS 361
           NFN T   + TN         F +FV +V   R+ S
Sbjct: 61  NFNGTC-MDFTN------FVTFNRFVSRVLSTREDS 89


>ref|XP_003628780.1| F-box family protein [Medicago truncatula]
           gi|355522802|gb|AET03256.1| F-box family protein
           [Medicago truncatula]
          Length = 451

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 48/126 (38%), Positives = 63/126 (50%)
 Frame = +2

Query: 5   SSVSTFDSLISHVLSAMGKSNRQMSHKKKLKKNDTGQNNEDRLSSLPDNILHKILDLLDT 184
           S   T       V+S  G  NR    KK+ K N     N+DR+S LPD IL  IL  L+T
Sbjct: 42  SGALTASKFCKSVVSPAG--NRSFQMKKRRKNNHNHTENKDRISDLPDCILFHILSSLET 99

Query: 185 LYAVRSSILSKRWRDLWTCLSNLNFNSTIDYEATNKHLNNKDEIFTKFVDQVFIHRDRSC 364
            +AV+++ILS RW +LW  L  L  NS+        H     + FTKFV +V   RD S 
Sbjct: 100 KHAVQTTILSTRWNNLWKRLPTLRLNSS--------HFKTL-KSFTKFVSRVLSLRDDST 150

Query: 365 NIRTFH 382
            + T +
Sbjct: 151 ALHTLY 156


>ref|XP_003598679.1| F-box family protein [Medicago truncatula]
           gi|355487727|gb|AES68930.1| F-box family protein
           [Medicago truncatula]
          Length = 361

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 40/88 (45%), Positives = 53/88 (60%)
 Frame = +2

Query: 113 QNNEDRLSSLPDNILHKILDLLDTLYAVRSSILSKRWRDLWTCLSNLNFNSTIDYEATNK 292
           +NNEDRLS LPD+ILH IL LLDT  A ++SILS RW++L   LS L  +ST+ Y     
Sbjct: 21  ENNEDRLSDLPDSILHHILSLLDTKQAFQTSILSTRWKNLPKHLSTLRLSSTVFYSF--- 77

Query: 293 HLNNKDEIFTKFVDQVFIHRDRSCNIRT 376
                 + F K V ++  HRD   ++ T
Sbjct: 78  ------DSFMKSVSRILSHRDDLTSLHT 99


>ref|XP_003541682.1| PREDICTED: F-box protein At3g59000-like [Glycine max]
          Length = 306

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
 Frame = +2

Query: 65  NRQMSHKKKLKKNDTGQNNE---DRLSSLPDNILHKILDLLDTLYAVRSSILSKRWRDLW 235
           +R    KK + +   G+N +   DR+S+LPD++L  +++ +DT  AV++ +LSKRW DL 
Sbjct: 92  DRISERKKNIAREVDGENEDHRPDRISALPDSLLFHMINFMDTKSAVQTCVLSKRWNDLS 151

Query: 236 TCLSNLNFNSTIDYEATNKHLNNKDEIFTKFVDQVFIHRDRS 361
            CL+NL FNS +  E         D  F KF   V   RD S
Sbjct: 152 KCLTNLTFNSDLPSEGL-------DRSFKKFESWVLSSRDDS 186


>ref|NP_001064084.1| Os10g0126800 [Oryza sativa Japonica Group]
           gi|20042915|gb|AAM08743.1|AC025098_10 Unknown protein
           [Oryza sativa Japonica Group] gi|31429986|gb|AAP51963.1|
           F-box domain containing protein, expressed [Oryza sativa
           Japonica Group] gi|113638693|dbj|BAF25998.1|
           Os10g0126800 [Oryza sativa Japonica Group]
          Length = 454

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 9/95 (9%)
 Frame = +2

Query: 122 EDRLSSLPDNILHKILDLLDTLYAVRSSILSKRWRDLWT---------CLSNLNFNSTID 274
           EDRLS LP+ +LH+++  LD+  AVR+ +LS+RWRD+W          C   LN+ S  D
Sbjct: 61  EDRLSDLPEGVLHRVMSFLDSRQAVRTCVLSRRWRDVWRTVPRVHADFCDFTLNWTSD-D 119

Query: 275 YEATNKHLNNKDEIFTKFVDQVFIHRDRSCNIRTF 379
            E     +   + +F +FV+++   RD + +IR+F
Sbjct: 120 DEVDEAAVAEDEVVFNRFVNRLLELRDPNASIRSF 154