BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025557
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containi...   202   2e-50
ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containi...   187   8e-46
ref|XP_003623854.1| Pentatricopeptide repeat-containing protein ...   183   1e-44
gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]   183   1e-44
ref|XP_002512769.1| pentatricopeptide repeat-containing protein,...   182   3e-44

>ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera] gi|297736133|emb|CBI24171.3| unnamed
           protein product [Vitis vinifera]
          Length = 687

 Score =  202 bits (515), Expect = 2e-50
 Identities = 92/111 (82%), Positives = 105/111 (94%)
 Frame = +2

Query: 2   SDKIYKFLEELGDKMRLAGYLPNTDFVLQDVDQEEKEEVLCSHSEKLAVAFGILNLSGGS 181
           SD+IY+FL+ +G+KMR+AGYLPNTDFVLQDVDQEEKEEVLC+HSEKLAVAFG+LNL+G S
Sbjct: 577 SDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGES 636

Query: 182 SIRVFKNLRVCGDCHTAIKFMSKIVGVQITLRDSLRFHHFSDGFCSCQDFW 334
           SIRVFKNLR+CGDCH AIKFM+KIVGV+I +RDSLRFHHF DG CSCQDFW
Sbjct: 637 SIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687


>ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  187 bits (475), Expect = 8e-46
 Identities = 86/111 (77%), Positives = 99/111 (89%)
 Frame = +2

Query: 2   SDKIYKFLEELGDKMRLAGYLPNTDFVLQDVDQEEKEEVLCSHSEKLAVAFGILNLSGGS 181
           SDKIY FL+ELG+KM+ AGY P+TD+VLQD+DQEEK E LCSHSEKLAVAFGILNL+G S
Sbjct: 631 SDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQS 690

Query: 182 SIRVFKNLRVCGDCHTAIKFMSKIVGVQITLRDSLRFHHFSDGFCSCQDFW 334
           SIRVFKNLR+CGDCH AIK++SK+VGV I +RDSLRFHHF +G CSCQD W
Sbjct: 691 SIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741


>ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498869|gb|AES80072.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  183 bits (464), Expect = 1e-44
 Identities = 83/111 (74%), Positives = 99/111 (89%)
 Frame = +2

Query: 2   SDKIYKFLEELGDKMRLAGYLPNTDFVLQDVDQEEKEEVLCSHSEKLAVAFGILNLSGGS 181
           SDKIY FL+EL +KM++AGY P+TD+VLQD+DQEEK E LC+HSEKLAVAFGILNL+G S
Sbjct: 663 SDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQS 722

Query: 182 SIRVFKNLRVCGDCHTAIKFMSKIVGVQITLRDSLRFHHFSDGFCSCQDFW 334
           +IRVFKNLR+CGDCH AIK+MSK+VGV I +RDSLRFHHF +G CSC+D W
Sbjct: 723 TIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773


>gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  183 bits (464), Expect = 1e-44
 Identities = 83/111 (74%), Positives = 99/111 (89%)
 Frame = +2

Query: 2   SDKIYKFLEELGDKMRLAGYLPNTDFVLQDVDQEEKEEVLCSHSEKLAVAFGILNLSGGS 181
           SDKIY FL+EL +KM++AGY P+TD+VLQD+DQEEK E LC+HSEKLAVAFGILNL+G S
Sbjct: 577 SDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQS 636

Query: 182 SIRVFKNLRVCGDCHTAIKFMSKIVGVQITLRDSLRFHHFSDGFCSCQDFW 334
           +IRVFKNLR+CGDCH AIK+MSK+VGV I +RDSLRFHHF +G CSC+D W
Sbjct: 637 TIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687


>ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547780|gb|EEF49272.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 684

 Score =  182 bits (461), Expect = 3e-44
 Identities = 80/110 (72%), Positives = 98/110 (89%)
 Frame = +2

Query: 5   DKIYKFLEELGDKMRLAGYLPNTDFVLQDVDQEEKEEVLCSHSEKLAVAFGILNLSGGSS 184
           D IY+FL+E+ +KMRL GY PNTDFVLQ+VDQE++EE LCSHSE+LAVAFGILN SG ++
Sbjct: 575 DMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTT 634

Query: 185 IRVFKNLRVCGDCHTAIKFMSKIVGVQITLRDSLRFHHFSDGFCSCQDFW 334
           +RVFKNLR+CGDCH AIK ++KIVG+QI +RDSLRFHHF DG+C+C DFW
Sbjct: 635 VRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684