BLASTX nr result
ID: Coptis25_contig00025520
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025520 (360 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 68 9e-10 ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript... 42 3e-08 dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 42 3e-08 gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 41 2e-07 gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 41 3e-07 >ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1| predicted protein [Populus trichocarpa] Length = 517 Score = 67.8 bits (164), Expect = 9e-10 Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 3/52 (5%) Frame = +2 Query: 5 NHAANLRHIWNIIRDT---IWVRWVQKNLIRGRNFWDLKIPNDCSWGWQKWL 151 N A L+HIWN+ D+ IW W++ NL+RGRNFW +K P +CSW W K L Sbjct: 170 NKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKIL 221 Score = 37.7 bits (86), Expect(2) = 5e-06 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +3 Query: 255 DGGTSHALLSWDDVCCPFNEGGLGIRSLEVTNHAA 359 D T+ A ++WD VC P EGGLGI+S++ N A Sbjct: 139 DMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIA 173 Score = 37.4 bits (85), Expect(2) = 5e-06 Identities = 12/34 (35%), Positives = 26/34 (76%) Frame = +1 Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249 +V+ ++ VYW S+F+LP + I+ ++ + ++FLW+ Sbjct: 103 SVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWS 136 >ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein [Arabidopsis thaliana] Length = 746 Score = 41.6 bits (96), Expect(2) = 3e-08 Identities = 18/33 (54%), Positives = 23/33 (69%) Frame = +3 Query: 252 PDGGTSHALLSWDDVCCPFNEGGLGIRSLEVTN 350 P+ T A ++W DVC P +EGGLGIRSL+ N Sbjct: 107 PELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139 Score = 41.2 bits (95), Expect(2) = 3e-08 Identities = 16/34 (47%), Positives = 26/34 (76%) Frame = +1 Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249 +VI++L+ +W+S F LP I+EID +C +FLW+ Sbjct: 72 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWS 105 >dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] Length = 478 Score = 41.6 bits (96), Expect(2) = 3e-08 Identities = 18/33 (54%), Positives = 23/33 (69%) Frame = +3 Query: 252 PDGGTSHALLSWDDVCCPFNEGGLGIRSLEVTN 350 P+ T A ++W DVC P +EGGLGIRSL+ N Sbjct: 107 PELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139 Score = 41.2 bits (95), Expect(2) = 3e-08 Identities = 16/34 (47%), Positives = 26/34 (76%) Frame = +1 Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249 +VI++L+ +W+S F LP I+EID +C +FLW+ Sbjct: 72 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWS 105 >gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata] Length = 441 Score = 41.2 bits (95), Expect(2) = 2e-07 Identities = 17/34 (50%), Positives = 25/34 (73%) Frame = +1 Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249 +VI++L+ +W+S F LP I+EID LC FLW+ Sbjct: 36 SVIHSLTNFWMSAFRLPNACIKEIDGLCSAFLWS 69 Score = 38.9 bits (89), Expect(2) = 2e-07 Identities = 17/33 (51%), Positives = 21/33 (63%) Frame = +3 Query: 252 PDGGTSHALLSWDDVCCPFNEGGLGIRSLEVTN 350 P+ A +SW+DVC P EGGLG+RSL N Sbjct: 71 PELNRKKAKVSWNDVCMPKEEGGLGLRSLTEAN 103 >gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1449 Score = 40.8 bits (94), Expect(2) = 3e-07 Identities = 17/33 (51%), Positives = 23/33 (69%) Frame = +3 Query: 252 PDGGTSHALLSWDDVCCPFNEGGLGIRSLEVTN 350 PD + A ++WDDVC P EGGLG+RS++ N Sbjct: 1130 PDLNSHKAKVAWDDVCKPKKEGGLGLRSIKEAN 1162 Score = 38.5 bits (88), Expect(2) = 3e-07 Identities = 15/34 (44%), Positives = 24/34 (70%) Frame = +1 Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249 +V+ ++ +WL+ F LP++ I EID LC FLW+ Sbjct: 1095 SVLWSICNFWLAAFRLPRKCIREIDKLCSTFLWS 1128