BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025520
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    68   9e-10
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    42   3e-08
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            42   3e-08
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    41   2e-07
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    41   3e-07

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
 Frame = +2

Query: 5   NHAANLRHIWNIIRDT---IWVRWVQKNLIRGRNFWDLKIPNDCSWGWQKWL 151
           N  A L+HIWN+  D+   IW  W++ NL+RGRNFW +K P +CSW W K L
Sbjct: 170 NKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKIL 221



 Score = 37.7 bits (86), Expect(2) = 5e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 255 DGGTSHALLSWDDVCCPFNEGGLGIRSLEVTNHAA 359
           D  T+ A ++WD VC P  EGGLGI+S++  N  A
Sbjct: 139 DMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIA 173



 Score = 37.4 bits (85), Expect(2) = 5e-06
 Identities = 12/34 (35%), Positives = 26/34 (76%)
 Frame = +1

Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249
           +V+ ++ VYW S+F+LP + I+ ++ + ++FLW+
Sbjct: 103 SVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWS 136


>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 41.6 bits (96), Expect(2) = 3e-08
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 252 PDGGTSHALLSWDDVCCPFNEGGLGIRSLEVTN 350
           P+  T  A ++W DVC P +EGGLGIRSL+  N
Sbjct: 107 PELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139



 Score = 41.2 bits (95), Expect(2) = 3e-08
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +1

Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249
           +VI++L+ +W+S F LP   I+EID +C +FLW+
Sbjct: 72  SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWS 105


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 41.6 bits (96), Expect(2) = 3e-08
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 252 PDGGTSHALLSWDDVCCPFNEGGLGIRSLEVTN 350
           P+  T  A ++W DVC P +EGGLGIRSL+  N
Sbjct: 107 PELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139



 Score = 41.2 bits (95), Expect(2) = 3e-08
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +1

Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249
           +VI++L+ +W+S F LP   I+EID +C +FLW+
Sbjct: 72  SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWS 105


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 41.2 bits (95), Expect(2) = 2e-07
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = +1

Query: 148 AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249
           +VI++L+ +W+S F LP   I+EID LC  FLW+
Sbjct: 36  SVIHSLTNFWMSAFRLPNACIKEIDGLCSAFLWS 69



 Score = 38.9 bits (89), Expect(2) = 2e-07
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +3

Query: 252 PDGGTSHALLSWDDVCCPFNEGGLGIRSLEVTN 350
           P+     A +SW+DVC P  EGGLG+RSL   N
Sbjct: 71  PELNRKKAKVSWNDVCMPKEEGGLGLRSLTEAN 103


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score = 40.8 bits (94), Expect(2) = 3e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +3

Query: 252  PDGGTSHALLSWDDVCCPFNEGGLGIRSLEVTN 350
            PD  +  A ++WDDVC P  EGGLG+RS++  N
Sbjct: 1130 PDLNSHKAKVAWDDVCKPKKEGGLGLRSIKEAN 1162



 Score = 38.5 bits (88), Expect(2) = 3e-07
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +1

Query: 148  AVINNLSVYWLSIFVLPKRAIEEIDWLCRNFLWT 249
            +V+ ++  +WL+ F LP++ I EID LC  FLW+
Sbjct: 1095 SVLWSICNFWLAAFRLPRKCIREIDKLCSTFLWS 1128