BLASTX nr result
ID: Coptis25_contig00025501
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00025501 (1012 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|2... 243 1e-66 ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat... 241 2e-66 ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat... 241 5e-66 ref|XP_003628710.1| Pentatricopeptide repeat-containing protein ... 238 1e-65 ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat... 231 9e-65 >ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa] Length = 743 Score = 243 bits (621), Expect(2) = 1e-66 Identities = 113/141 (80%), Positives = 130/141 (92%) Frame = -3 Query: 929 RRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSSIL 750 R +G RKEPG+SWIK+K+KVYIFSADD+S+ +SD+IY ELE+LN +MI+EGYVPD SS+L Sbjct: 601 REKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVL 660 Query: 749 HDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQRE 570 HDVE +EK+KML HHSE+LAIAFGL+FIP GLPIRVVKNLRVCGDCHNATK+ISKI QRE Sbjct: 661 HDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQRE 720 Query: 569 ILVRDAVRFHLFKDGTCSCED 507 ILVRDAVRFHLFKDGTCSC D Sbjct: 721 ILVRDAVRFHLFKDGTCSCGD 741 Score = 37.4 bits (85), Expect(2) = 1e-66 Identities = 17/24 (70%), Positives = 20/24 (83%) Frame = -1 Query: 1012 NPASYVLLSKIYAAKGKRDDVARL 941 NPA Y+LLS IYAAKGK +VA+L Sbjct: 573 NPAGYILLSSIYAAKGKWSNVAQL 596 >ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Vitis vinifera] gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera] Length = 743 Score = 241 bits (614), Expect(2) = 2e-66 Identities = 111/141 (78%), Positives = 129/141 (91%) Frame = -3 Query: 929 RRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSSIL 750 R + +RKEPGYSWIK+K KV++FSADD+S+ + +IY ELE+LN +MI+EGYVPD SS+L Sbjct: 601 RDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVL 660 Query: 749 HDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQRE 570 HDVE++EKIKML HHSE+LAIAFGLIF+PPGLPIRV+KNLRVCGDCHNATKFISKI QRE Sbjct: 661 HDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQRE 720 Query: 569 ILVRDAVRFHLFKDGTCSCED 507 ILVRDAVRFHLFKDGTCSC D Sbjct: 721 ILVRDAVRFHLFKDGTCSCGD 741 Score = 38.9 bits (89), Expect(2) = 2e-66 Identities = 18/24 (75%), Positives = 21/24 (87%) Frame = -1 Query: 1012 NPASYVLLSKIYAAKGKRDDVARL 941 NPASYVLLS +YA+KGK D VA+L Sbjct: 573 NPASYVLLSSLYASKGKWDKVAQL 596 >ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Glycine max] Length = 747 Score = 241 bits (616), Expect(2) = 5e-66 Identities = 112/141 (79%), Positives = 128/141 (90%) Frame = -3 Query: 929 RRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSSIL 750 R +GLRKEPG SWIK+KN+V+IFSADD+SN +SD+IY ELE+LN +M+ EGYVPD +S+L Sbjct: 605 RDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVL 664 Query: 749 HDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQRE 570 HDV+ +EKIKML HHSE+LAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATK+ISKI QRE Sbjct: 665 HDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQRE 724 Query: 569 ILVRDAVRFHLFKDGTCSCED 507 ILVRDA RFHLFKDG CSC D Sbjct: 725 ILVRDAARFHLFKDGRCSCGD 745 Score = 37.0 bits (84), Expect(2) = 5e-66 Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = -1 Query: 1012 NPASYVLLSKIYAAKGKRDDVARLNM-TRDVG 920 N ASY+LLS IYAAKGK ++VA L RD G Sbjct: 577 NTASYILLSSIYAAKGKWEEVANLRKGMRDKG 608 >ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 748 Score = 238 bits (606), Expect(2) = 1e-65 Identities = 110/143 (76%), Positives = 126/143 (88%) Frame = -3 Query: 935 DTRRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSS 756 D R +GLRKEPG SWIK+KN+V++FSADD+SN +SD+IY ELE+LN +MI EGYVPD +S Sbjct: 604 DMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNS 663 Query: 755 ILHDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQ 576 +LHDV +EKIKML HHSE+LAIAFGL+FIPPGLPIRVVKNLRVC DCHNATK+ISKI Sbjct: 664 VLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITN 723 Query: 575 REILVRDAVRFHLFKDGTCSCED 507 REILVRD RFHLFKDGTCSC D Sbjct: 724 REILVRDTARFHLFKDGTCSCGD 746 Score = 39.3 bits (90), Expect(2) = 1e-65 Identities = 21/34 (61%), Positives = 26/34 (76%) Frame = -1 Query: 1012 NPASYVLLSKIYAAKGKRDDVARLNMTRDVGD*G 911 N ASYVLLS +YAAKGK ++VARL +D+ D G Sbjct: 578 NTASYVLLSSVYAAKGKWEEVARLR--KDMRDKG 609 >ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus] gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus] Length = 743 Score = 231 bits (588), Expect(2) = 9e-65 Identities = 108/141 (76%), Positives = 126/141 (89%) Frame = -3 Query: 929 RRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSSIL 750 R G++KEPG+SWIK+KNKV+IFSADDRS+ +SD+IY +LE L +MI+EGYVPD S +L Sbjct: 601 REMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVL 660 Query: 749 HDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQRE 570 HDVE++EKIKML HHSE+LAIAFGL+FIP GL IRVVKNLRVCGDCHNATK+IS+I QRE Sbjct: 661 HDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQRE 720 Query: 569 ILVRDAVRFHLFKDGTCSCED 507 ILVRDAVRFHLFKDG CSC D Sbjct: 721 ILVRDAVRFHLFKDGVCSCGD 741 Score = 43.5 bits (101), Expect(2) = 9e-65 Identities = 20/24 (83%), Positives = 22/24 (91%) Frame = -1 Query: 1012 NPASYVLLSKIYAAKGKRDDVARL 941 NPASY+LLS IYAAKGK DDVA+L Sbjct: 573 NPASYILLSSIYAAKGKWDDVAKL 596