BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025501
         (1012 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|2...   243   1e-66
ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat...   241   2e-66
ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat...   241   5e-66
ref|XP_003628710.1| Pentatricopeptide repeat-containing protein ...   238   1e-65
ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat...   231   9e-65

>ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|222863951|gb|EEF01082.1|
            predicted protein [Populus trichocarpa]
          Length = 743

 Score =  243 bits (621), Expect(2) = 1e-66
 Identities = 113/141 (80%), Positives = 130/141 (92%)
 Frame = -3

Query: 929  RRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSSIL 750
            R +G RKEPG+SWIK+K+KVYIFSADD+S+ +SD+IY ELE+LN +MI+EGYVPD SS+L
Sbjct: 601  REKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVL 660

Query: 749  HDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQRE 570
            HDVE +EK+KML HHSE+LAIAFGL+FIP GLPIRVVKNLRVCGDCHNATK+ISKI QRE
Sbjct: 661  HDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQRE 720

Query: 569  ILVRDAVRFHLFKDGTCSCED 507
            ILVRDAVRFHLFKDGTCSC D
Sbjct: 721  ILVRDAVRFHLFKDGTCSCGD 741



 Score = 37.4 bits (85), Expect(2) = 1e-66
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -1

Query: 1012 NPASYVLLSKIYAAKGKRDDVARL 941
            NPA Y+LLS IYAAKGK  +VA+L
Sbjct: 573  NPAGYILLSSIYAAKGKWSNVAQL 596


>ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At1g68930 [Vitis vinifera] gi|297738214|emb|CBI27415.3|
            unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  241 bits (614), Expect(2) = 2e-66
 Identities = 111/141 (78%), Positives = 129/141 (91%)
 Frame = -3

Query: 929  RRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSSIL 750
            R + +RKEPGYSWIK+K KV++FSADD+S+ +  +IY ELE+LN +MI+EGYVPD SS+L
Sbjct: 601  RDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVL 660

Query: 749  HDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQRE 570
            HDVE++EKIKML HHSE+LAIAFGLIF+PPGLPIRV+KNLRVCGDCHNATKFISKI QRE
Sbjct: 661  HDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQRE 720

Query: 569  ILVRDAVRFHLFKDGTCSCED 507
            ILVRDAVRFHLFKDGTCSC D
Sbjct: 721  ILVRDAVRFHLFKDGTCSCGD 741



 Score = 38.9 bits (89), Expect(2) = 2e-66
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -1

Query: 1012 NPASYVLLSKIYAAKGKRDDVARL 941
            NPASYVLLS +YA+KGK D VA+L
Sbjct: 573  NPASYVLLSSLYASKGKWDKVAQL 596


>ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At1g68930-like [Glycine max]
          Length = 747

 Score =  241 bits (616), Expect(2) = 5e-66
 Identities = 112/141 (79%), Positives = 128/141 (90%)
 Frame = -3

Query: 929  RRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSSIL 750
            R +GLRKEPG SWIK+KN+V+IFSADD+SN +SD+IY ELE+LN +M+ EGYVPD +S+L
Sbjct: 605  RDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVL 664

Query: 749  HDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQRE 570
            HDV+ +EKIKML HHSE+LAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATK+ISKI QRE
Sbjct: 665  HDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQRE 724

Query: 569  ILVRDAVRFHLFKDGTCSCED 507
            ILVRDA RFHLFKDG CSC D
Sbjct: 725  ILVRDAARFHLFKDGRCSCGD 745



 Score = 37.0 bits (84), Expect(2) = 5e-66
 Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -1

Query: 1012 NPASYVLLSKIYAAKGKRDDVARLNM-TRDVG 920
            N ASY+LLS IYAAKGK ++VA L    RD G
Sbjct: 577  NTASYILLSSIYAAKGKWEEVANLRKGMRDKG 608


>ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355522732|gb|AET03186.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  238 bits (606), Expect(2) = 1e-65
 Identities = 110/143 (76%), Positives = 126/143 (88%)
 Frame = -3

Query: 935  DTRRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSS 756
            D R +GLRKEPG SWIK+KN+V++FSADD+SN +SD+IY ELE+LN +MI EGYVPD +S
Sbjct: 604  DMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNS 663

Query: 755  ILHDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQ 576
            +LHDV  +EKIKML HHSE+LAIAFGL+FIPPGLPIRVVKNLRVC DCHNATK+ISKI  
Sbjct: 664  VLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITN 723

Query: 575  REILVRDAVRFHLFKDGTCSCED 507
            REILVRD  RFHLFKDGTCSC D
Sbjct: 724  REILVRDTARFHLFKDGTCSCGD 746



 Score = 39.3 bits (90), Expect(2) = 1e-65
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -1

Query: 1012 NPASYVLLSKIYAAKGKRDDVARLNMTRDVGD*G 911
            N ASYVLLS +YAAKGK ++VARL   +D+ D G
Sbjct: 578  NTASYVLLSSVYAAKGKWEEVARLR--KDMRDKG 609


>ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At1g68930-like [Cucumis sativus]
            gi|449493520|ref|XP_004159329.1| PREDICTED: putative
            pentatricopeptide repeat-containing protein
            At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  231 bits (588), Expect(2) = 9e-65
 Identities = 108/141 (76%), Positives = 126/141 (89%)
 Frame = -3

Query: 929  RRRGLRKEPGYSWIKFKNKVYIFSADDRSNQYSDRIYEELERLNSRMIDEGYVPDTSSIL 750
            R  G++KEPG+SWIK+KNKV+IFSADDRS+ +SD+IY +LE L  +MI+EGYVPD S +L
Sbjct: 601  REMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVL 660

Query: 749  HDVEQAEKIKMLGHHSERLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKFISKIVQRE 570
            HDVE++EKIKML HHSE+LAIAFGL+FIP GL IRVVKNLRVCGDCHNATK+IS+I QRE
Sbjct: 661  HDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQRE 720

Query: 569  ILVRDAVRFHLFKDGTCSCED 507
            ILVRDAVRFHLFKDG CSC D
Sbjct: 721  ILVRDAVRFHLFKDGVCSCGD 741



 Score = 43.5 bits (101), Expect(2) = 9e-65
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = -1

Query: 1012 NPASYVLLSKIYAAKGKRDDVARL 941
            NPASY+LLS IYAAKGK DDVA+L
Sbjct: 573  NPASYILLSSIYAAKGKWDDVAKL 596