BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025497
         (1226 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526240.1| conserved hypothetical protein [Ricinus comm...   113   9e-23
ref|XP_002315369.1| f-box family protein [Populus trichocarpa] g...    94   7e-17
ref|XP_002523045.1| hypothetical protein RCOM_1104900 [Ricinus c...    92   3e-16
ref|XP_002269241.1| PREDICTED: F-box protein At5g07610 [Vitis vi...    92   3e-16
ref|XP_002520646.1| conserved hypothetical protein [Ricinus comm...    91   8e-16

>ref|XP_002526240.1| conserved hypothetical protein [Ricinus communis]
            gi|223534434|gb|EEF36137.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 393

 Score =  113 bits (283), Expect = 9e-23
 Identities = 97/332 (29%), Positives = 152/332 (45%)
 Frame = +2

Query: 188  DSKKEMEIEVLENDDLLQEILFHIPPVYVQRLKCVCKRWHKLISSSSFRRLHTVYVLRDY 367
            DS    EI +  N+DL+ +IL  +P   + R K V K+W  LIS+  F  LHT+      
Sbjct: 2    DSSLSAEI-IGSNEDLITQILLRLPVKPLLRFKSVSKQWLSLISTPHFSSLHTL------ 54

Query: 368  CSGPGQLLPSIFMQSHCNRREHLVLVLLNADGLAALKEDPDLSFSFIFHNYPDVMSLESR 547
               P   + ++F+++  +  E   L L ++   ++    P LSF  +FH           
Sbjct: 55   -RNPNHTISALFLRN--SPLEFKFLSLSSSSSSSSSSASP-LSFD-LFHG---------- 99

Query: 548  YCFKTLDSSNGLLLLASFNKGHGNQNHVFVCNPLTKDYIKLPPIISCXXXXXXXXXXVVA 727
               K L S NGLLL ++  K  G + + ++ NP TK    LP ++               
Sbjct: 100  --IKILQSCNGLLLCSTLPK-IGQKRNYYISNPTTKQMFTLPSLVG-------DANAASP 149

Query: 728  TKLLGMNLVFDPLKSFHYKVVGICGVKHSMKEGNRYSTFRIHIYSSESHRWEVSKDFDVC 907
            T L G+NL FDPLKS +YKV+ +    +S+ +      ++I  Y SE   W +S    V 
Sbjct: 150  TTLFGLNLAFDPLKSCNYKVICVRSTTNSIYQ------YQIETYQSEIAAWRLSGLPFVA 203

Query: 908  PDIMAGIAKCVVMNGVLYWPPCQGGETILSFDSETVCLRQLSLPPQTPCNINRSWDYFGE 1087
            P  M      V  NG ++W    G    + FD +  C+  +   P +     R + YFGE
Sbjct: 204  PFDMV-FDNGVFWNGAIHWISATG--NAIYFDMDRECISSMPKLPFSYEWGKRRFRYFGE 260

Query: 1088 SRGHLYLLEKCFSYDTYNEQPFGYNIWEMKNE 1183
            S GHL+L+E       Y  +   +N++EM+ +
Sbjct: 261  SDGHLHLIE------IYGLRTTQFNVYEMEKD 286


>ref|XP_002315369.1| f-box family protein [Populus trichocarpa]
            gi|222864409|gb|EEF01540.1| f-box family protein [Populus
            trichocarpa]
          Length = 406

 Score = 94.0 bits (232), Expect = 7e-17
 Identities = 78/302 (25%), Positives = 125/302 (41%)
 Frame = +2

Query: 209  IEVLENDDLLQEILFHIPPVYVQRLKCVCKRWHKLISSSSFRRLHTVYVLRDYCSGPGQL 388
            I +++  D++ EIL  +P   +   KCVC+ W+ LIS         +++       P   
Sbjct: 30   IMIMDEKDIMIEILHRLPLKSLLISKCVCRLWNHLISD-------PIFISNYSRRNPQHH 82

Query: 389  LPSIFMQSHCNRREHLVLVLLNADGLAALKEDPDLSFSFIFHNYPDVMSLESRYCFKTLD 568
            +   F+Q      ++  L  +  +G      +P L F          +  +   C +   
Sbjct: 83   VSGFFLQKFLFLEQYSKLEFITCEGQDDAAPEPSLCF----------IEDDQGVCIQ--H 130

Query: 569  SSNGLLLLASFNKGHGNQNHVFVCNPLTKDYIKLPPIISCXXXXXXXXXXVVATKLLGMN 748
            S NGLLL +SF + H +    ++C P TK Y +LP    C               + G+N
Sbjct: 131  SCNGLLLCSSF-RCHEDDRKYYICKPTTKQYHQLPK-PGCKI-------------VFGIN 175

Query: 749  LVFDPLKSFHYKVVGICGVKHSMKEGNRYSTFRIHIYSSESHRWEVSKDFDVCPDIMAGI 928
            + +DP  S HYK++ +C             +  I +Y S    W VS +  V   ++   
Sbjct: 176  IAYDPTISPHYKIICVC------------DSNAIKMYDSAIGSWRVSGNHQVFSHVLL-F 222

Query: 929  AKCVVMNGVLYWPPCQGGETILSFDSETVCLRQLSLPPQTPCNINRSWDYFGESRGHLYL 1108
             + V +N  L+W     G   L FD E   +  + +PP       R   YFGES GHL L
Sbjct: 223  NRGVFLNRALHW--ISRGALALRFDIEQERMLTMPMPPIPEGRSERRLGYFGESGGHLCL 280

Query: 1109 LE 1114
            +E
Sbjct: 281  IE 282


>ref|XP_002523045.1| hypothetical protein RCOM_1104900 [Ricinus communis]
            gi|223537728|gb|EEF39349.1| hypothetical protein
            RCOM_1104900 [Ricinus communis]
          Length = 408

 Score = 92.0 bits (227), Expect = 3e-16
 Identities = 92/331 (27%), Positives = 142/331 (42%), Gaps = 26/331 (7%)
 Frame = +2

Query: 215  VLENDDLLQEILFHIPPVYVQRLKCVCKRWHKLISSSSFRRLHTVYVLRDYCSGPGQLLP 394
            V E +DL+ EIL  +P   + R KCV K+W  LIS   F   H+      +       + 
Sbjct: 8    VAEIEDLVIEILLRVPTKELLRCKCVSKQWLSLISDPHFCASHS-----RFQQSFNPRIT 62

Query: 395  SIFMQSHCNRREHLVLVLLNADGLAALKEDPDLSFSFIFHNYPDVMSLESRYCFKTLDSS 574
            ++F+  + +  E  V+ L+++         P  S +F+  +Y +V         K L S 
Sbjct: 63   ALFLDVNKHIPEFQVIPLVSS---------PFTSGAFVVKDYFNVRRA------KILQSC 107

Query: 575  NGLLLL-ASFNKGHGNQNH--------------VFVCNPLTKDYIKLPPIISCXXXXXXX 709
            NGLLL  +SF    G   H               F+ NP T+ + KL    S        
Sbjct: 108  NGLLLCRSSFLVHFGVNRHPYFEDFDINDRGYFYFIYNPTTRQFKKLSLPTSVNEKLRIS 167

Query: 710  XXXVVATKLLGMNLVFDPLKSFHYKVVGICGVKHSMKEGNRYSTFRIHIYSSESHRW--- 880
               +  T LL + LVFDP+ S HY+++ I  +   +K+   Y    + IYSSE   W   
Sbjct: 168  GNELAGTGLLSVCLVFDPVISSHYRIIFISNL-CDLKDSTTY-WLEVCIYSSEFDTWTSQ 225

Query: 881  ----EVSKDFDVCPDIMAGIAKC---VVMNGVLYWPPCQGGETILSFDSETVCL-RQLSL 1036
                ++    D+ P  + GI      V   G ++W  C    ++LSFD +T+   +Q+  
Sbjct: 226  RASVDIEIFLDISPQPVLGIYNYNHGVYCYGSMHWLRCDAVYSLLSFDVDTLSFNKQMHF 285

Query: 1037 PPQTPCNINRSWDYFGESRGHLYLLEKCFSY 1129
            P            YFGES+GHL+    C +Y
Sbjct: 286  PDDIFVR------YFGESQGHLH----CVTY 306


>ref|XP_002269241.1| PREDICTED: F-box protein At5g07610 [Vitis vinifera]
            gi|297743579|emb|CBI36446.3| unnamed protein product
            [Vitis vinifera]
          Length = 374

 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 89/324 (27%), Positives = 129/324 (39%), Gaps = 1/324 (0%)
 Frame = +2

Query: 215  VLENDDLLQEILFHIPPVYVQRLKCVCKRWHKLISSSSFRRLHTVYVLRDYCSGPGQLLP 394
            V  NDDLL E+L  +P   + + K V K W  LI+   F R                   
Sbjct: 17   VASNDDLLSELLLRLPIKSLLKFKSVSKHWLSLITDPHFSRRK----------------- 59

Query: 395  SIFMQSHCNRREHLVLVLLNADGLAALKED-PDLSFSFIFHNYPDVMSLESRYCFKTLDS 571
                    N + + V  L +   L  L+   P  S +F+ H              + L S
Sbjct: 60   --------NLKPNPVSALFSFVPLDPLQTSAPFTSLTFVDHPRG----------IEILQS 101

Query: 572  SNGLLLLASFNKGHGNQNHVFVCNPLTKDYIKLPPIISCXXXXXXXXXXVVATKLLGMNL 751
             NGL   +S +     + + ++ NP TK +  LPP+                 ++LG+NL
Sbjct: 102  CNGLFCCSSVDYNDSERKY-YIYNPTTKQFTTLPPLCGRS-----------VRRVLGVNL 149

Query: 752  VFDPLKSFHYKVVGICGVKHSMKEGNRYSTFRIHIYSSESHRWEVSKDFDVCPDIMAGIA 931
             FDP KS  YKVV +   K S      Y   +I I S E+  W VS      P I     
Sbjct: 150  AFDPSKSHTYKVVCVQRCKSS------YDHCQIQISSLETGPWRVSGVPFAAP-ISVDFP 202

Query: 932  KCVVMNGVLYWPPCQGGETILSFDSETVCLRQLSLPPQTPCNINRSWDYFGESRGHLYLL 1111
              V  NG ++W      E  L FD     +R++ +PP    +  R    FGES GHL+L+
Sbjct: 203  SGVYWNGAIHW--ISPREASLYFDLNEELVREMPMPPVPDDSNERGIRCFGESCGHLHLV 260

Query: 1112 EKCFSYDTYNEQPFGYNIWEMKNE 1183
            E       Y      +N++EM+ +
Sbjct: 261  E------IYESSTTQFNVYEMERD 278


>ref|XP_002520646.1| conserved hypothetical protein [Ricinus communis]
            gi|223540166|gb|EEF41742.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 397

 Score = 90.5 bits (223), Expect = 8e-16
 Identities = 94/331 (28%), Positives = 137/331 (41%), Gaps = 15/331 (4%)
 Frame = +2

Query: 227  DDLLQEILFHIPPVYVQRLKCVCKRWHKLISSSSFRRLHTVYVLRDYCSGPGQLLPSIFM 406
            +DLL EIL  +P   + + KCV K+W+ LISSS F   HT   LR   S P  LL +   
Sbjct: 20   EDLLIEILLRLPVKTLLKFKCVSKQWNSLISSSYFSISHT--RLRCTYSTPAALLLN--- 74

Query: 407  QSHCNRREHLVLVLLNADGLAALKEDPDLSFSFIFHNYPDVMSLESRYCFKTLDSSNGLL 586
                       ++ LN               SF   N+            + L S NGLL
Sbjct: 75   ----KGSTRFYVIYLN---------------SFTRGNFAHFFEFFKGSQLQILQSCNGLL 115

Query: 587  LL-ASFNKGHG--NQNHVFVCNPLTKDYIKLPPIISCXXXXXXXXXXVVATKLLGMNLVF 757
            L  +S  K H        FVCNP TK   ++   +S                L+ ++L F
Sbjct: 116  LCRSSMLKDHNLIGGFVYFVCNPTTKQSKRICYPVSLEQKFK-------TRYLMSVSLAF 168

Query: 758  DPLKSFHYKVVGICGVKHSMKEGNRYSTFRIHIYSSESHRWEVSKDFDVC---------P 910
            DP  S HYK+V I      +++         ++YSS++  W VS+  DV          P
Sbjct: 169  DPKMSPHYKIVFI----FELRKNKETHVVETYVYSSKNDSW-VSRREDVTELCMNLVPPP 223

Query: 911  DIMAGIAKCVVMNGVLYWPPCQG-GETILSFDSETVCLRQLSLPPQTPCNINRSWDYFGE 1087
             +  G    V  N  ++W    G   ++L F+ +T   +++  P +          YFGE
Sbjct: 224  TLGIGFRDGVYANAAIHWSRYNGRSSSLLCFNVDTFTFKKICFPAELKVR------YFGE 277

Query: 1088 SRGHLYLLEKCFSYDTYNEQPFG--YNIWEM 1174
            SRGHLY+L        YN+   G  Y++ E+
Sbjct: 278  SRGHLYVL-------AYNDMYHGLDYDVLEI 301