BLASTX nr result
ID: Coptis25_contig00025404
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00025404
(868 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002305323.1| predicted protein [Populus trichocarpa] gi|2... 71 2e-23
emb|CBI22199.3| unnamed protein product [Vitis vinifera] 81 3e-13
emb|CAN60905.1| hypothetical protein VITISV_028449 [Vitis vinifera] 79 2e-12
ref|NP_001067093.2| Os12g0572800 [Oryza sativa Japonica Group] g... 50 4e-11
dbj|BAJ20165.1| MEL2 [Oryza sativa Japonica Group] 50 2e-10
>ref|XP_002305323.1| predicted protein [Populus trichocarpa] gi|222848287|gb|EEE85834.1|
predicted protein [Populus trichocarpa]
Length = 1097
Score = 71.2 bits (173), Expect(3) = 2e-23
Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Frame = +1
Query: 526 EICKYFESPRGCARGANCSYAHGEAE---LKQGMQIACFPTTEELKQKIFIGGLPASFGS 696
EICKYF SPRGC RG C YAH E E +KQG + P +L++KIF+GGLPAS S
Sbjct: 569 EICKYFHSPRGCVRGTKCFYAHSEEERQQVKQGKYMIHSPAAGQLERKIFVGGLPASVDS 628
Score = 49.3 bits (116), Expect(3) = 2e-23
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +1
Query: 61 PDCVDAISEMNETPLFFAVKNDFLNCAQLPLRSGANKQTLNL 186
PDC+++ +EM ETPLFFAVKN + +C ++ L GA+ NL
Sbjct: 456 PDCINSNTEMEETPLFFAVKNGYKDCVEVLLHWGASTGVFNL 497
Score = 35.0 bits (79), Expect(3) = 2e-23
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Frame = +3
Query: 306 KQRSVDLAKSQDMQFLLNQ-DVSLW-SQPTQLKESRFWLK 419
KQR VDLA+SQDM+F+LN DV+L ++P Q K + WL+
Sbjct: 499 KQRPVDLAESQDMRFMLNNADVNLTVNRPIQQKYTA-WLQ 537
>emb|CBI22199.3| unnamed protein product [Vitis vinifera]
Length = 849
Score = 81.3 bits (199), Expect = 3e-13
Identities = 42/79 (53%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Frame = +1
Query: 496 PAKLSPKAKTEICKYFESPRGCARGANCSYAHGEAE---LKQGMQIACFPTTEELKQKIF 666
P + AKT IC+YFESP GC RGA C YAHGE E LKQG + T EELK+KIF
Sbjct: 297 PERTCSIAKTGICRYFESPGGCVRGAKCFYAHGEDELRRLKQGTRTQHSSTIEELKRKIF 356
Query: 667 IGGLPASFGSGVQVNKFDE 723
+GGLP+S + F+E
Sbjct: 357 VGGLPSSLDTDSLAKIFEE 375
Score = 60.5 bits (145), Expect(2) = 1e-09
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +1
Query: 61 PDCVDAISEMNETPLFFAVKNDFLNCAQLPLRSGANKQTLNL 186
PD V+A +EM ETPLFFAVKN++++CA+L LR GAN Q LNL
Sbjct: 193 PDGVNATTEMKETPLFFAVKNNYMDCAELLLRWGANSQVLNL 234
Score = 28.9 bits (63), Expect(2) = 1e-09
Identities = 11/18 (61%), Positives = 17/18 (94%)
Frame = +3
Query: 306 KQRSVDLAKSQDMQFLLN 359
+QR +DLAKSQ+M+F+L+
Sbjct: 236 RQRPIDLAKSQEMRFMLS 253
>emb|CAN60905.1| hypothetical protein VITISV_028449 [Vitis vinifera]
Length = 1609
Score = 78.6 bits (192), Expect = 2e-12
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 3/60 (5%)
Frame = +1
Query: 517 AKTEICKYFESPRGCARGANCSYAHGEAE---LKQGMQIACFPTTEELKQKIFIGGLPAS 687
AKT IC+YFESP GC RGA C YAHGE E LKQG + T EELK+KIF+GGLP+S
Sbjct: 1054 AKTGICRYFESPGGCVRGAKCFYAHGEDELRRLKQGTRTQHSSTIEELKRKIFVGGLPSS 1113
Score = 60.5 bits (145), Expect(2) = 1e-09
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +1
Query: 61 PDCVDAISEMNETPLFFAVKNDFLNCAQLPLRSGANKQTLNL 186
PD V+A +EM ETPLFFAVKN++++CA+L LR GAN Q LNL
Sbjct: 941 PDGVNATTEMKETPLFFAVKNNYMDCAELLLRWGANSQVLNL 982
Score = 28.9 bits (63), Expect(2) = 1e-09
Identities = 11/18 (61%), Positives = 17/18 (94%)
Frame = +3
Query: 306 KQRSVDLAKSQDMQFLLN 359
+QR +DLAKSQ+M+F+L+
Sbjct: 984 RQRPIDLAKSQEMRFMLS 1001
>ref|NP_001067093.2| Os12g0572800 [Oryza sativa Japonica Group]
gi|255670419|dbj|BAF30112.2| Os12g0572800 [Oryza sativa
Japonica Group]
Length = 1233
Score = 49.7 bits (117), Expect(3) = 4e-11
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +1
Query: 64 DCVDAISEMNETPLFFAVKNDFLNCAQLPLRSGANKQTLNL 186
DCVD S+ ETPLF AVKN L+C +L LRSGA+ + NL
Sbjct: 402 DCVDTPSKTKETPLFLAVKNGSLDCVKLLLRSGASTKVQNL 442
Score = 35.4 bits (80), Expect(3) = 4e-11
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 11/63 (17%)
Frame = +3
Query: 297 INSKQRSVDLAKSQDMQFLL-NQDVSLWSQPTQLKES-------RFWLK---DYQSDSDG 443
+N KQR +D+A SQDM+F+L + +V+ W++ + K+S + +L+ DY SD
Sbjct: 470 LNRKQRPIDVATSQDMRFILTSANVAPWNRSSHPKKSVTNKESCKEFLEDFGDYDSDDLN 529
Query: 444 EMF 452
E F
Sbjct: 530 ESF 532
Score = 28.5 bits (62), Expect(3) = 4e-11
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 541 FESPRGCARGANCSYAHGEAELKQGMQIACFPT---TEELKQKIFIGGLPASFGSGVQVN 711
F S G A+G + KQG + P + +KIF+GGLP S G+
Sbjct: 544 FRSSNGSAQGGK---SKNHCAPKQGSKFVPRPNHWPKHDYTRKIFVGGLPPSVGAEYLTE 600
Query: 712 KFD-EFG 729
F EFG
Sbjct: 601 FFTAEFG 607
>dbj|BAJ20165.1| MEL2 [Oryza sativa Japonica Group]
Length = 1160
Score = 49.7 bits (117), Expect(3) = 2e-10
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +1
Query: 64 DCVDAISEMNETPLFFAVKNDFLNCAQLPLRSGANKQTLNL 186
DCVD S+ ETPLF AVKN L+C +L LRSGA+ + NL
Sbjct: 387 DCVDTPSKTKETPLFLAVKNGSLDCVKLLLRSGASTKVQNL 427
Score = 32.7 bits (73), Expect(3) = 2e-10
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 11/60 (18%)
Frame = +3
Query: 306 KQRSVDLAKSQDMQFLL-NQDVSLWSQPTQLKES-------RFWLK---DYQSDSDGEMF 452
KQR +D+A SQDM+F+L + +V+ W++ + K+S + +L+ DY SD E F
Sbjct: 429 KQRPIDVATSQDMRFILTSANVAPWNRSSHPKKSVTNKESCKEFLEDFGDYDSDDLNESF 488
Score = 28.5 bits (62), Expect(3) = 2e-10
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 541 FESPRGCARGANCSYAHGEAELKQGMQIACFPT---TEELKQKIFIGGLPASFGSGVQVN 711
F S G A+G + KQG + P + +KIF+GGLP S G+
Sbjct: 500 FRSSNGSAQGGK---SKNHCAPKQGSKFVPRPNHWPKHDYTRKIFVGGLPPSVGAEYLTE 556
Query: 712 KFD-EFG 729
F EFG
Sbjct: 557 FFTAEFG 563