BLASTX nr result

ID: Coptis25_contig00025392 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025392
         (248 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21244.3| unnamed protein product [Vitis vinifera]               68   9e-10
emb|CAN71074.1| hypothetical protein VITISV_020460 [Vitis vinifera]    68   9e-10
gb|EEC76077.1| hypothetical protein OsI_13302 [Oryza sativa Indi...    64   1e-08
ref|NP_566278.1| protein FAR1-related sequence 7 [Arabidopsis th...    63   2e-08
gb|ABF98568.1| transposon protein, putative, unclassified, expre...    63   3e-08

>emb|CBI21244.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/73 (47%), Positives = 45/73 (61%)
 Frame = +3

Query: 30  SEFDNSIFEASDKGEMSSSSKPYVGMEFDSLHQAFLFYNEYAAVIGFSVRKDKTRKSNVD 209
           ++FD      S + E      P VGMEF+S   A++FYN YA V+GFSVRKD   KS V+
Sbjct: 60  AQFDLMQSRLSLENEDDIDEVPKVGMEFESEDDAYVFYNRYAKVVGFSVRKDFLNKSKVN 119

Query: 210 GSYLFRRFCCSKE 248
           G+ + RRF C KE
Sbjct: 120 GTVVSRRFTCFKE 132


>emb|CAN71074.1| hypothetical protein VITISV_020460 [Vitis vinifera]
          Length = 481

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/73 (47%), Positives = 45/73 (61%)
 Frame = +3

Query: 30  SEFDNSIFEASDKGEMSSSSKPYVGMEFDSLHQAFLFYNEYAAVIGFSVRKDKTRKSNVD 209
           ++FD      S + E      P VGMEF+S   A++FYN YA V+GFSVRKD   KS V+
Sbjct: 38  AQFDLMQSRLSLENEDDIDEVPKVGMEFESEDDAYVFYNRYAKVVGFSVRKDFLNKSKVN 97

Query: 210 GSYLFRRFCCSKE 248
           G+ + RRF C KE
Sbjct: 98  GTVVSRRFTCFKE 110


>gb|EEC76077.1| hypothetical protein OsI_13302 [Oryza sativa Indica Group]
           gi|222625686|gb|EEE59818.1| hypothetical protein
           OsJ_12363 [Oryza sativa Japonica Group]
          Length = 785

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
 Frame = +3

Query: 12  YMENNTSEFDNSIFEASDKGEMSS-----SSKPYVGMEFDSLHQAFLFYNEYAAVIGFSV 176
           Y EN  +   NS  E  D    SS     +S+P+VGMEF+S   A +FY  YA+ +GFSV
Sbjct: 22  YTENQMAFDVNS--EPVDMNNTSSKANLENSEPFVGMEFESEEAAKVFYMAYASRVGFSV 79

Query: 177 RKDKTRKSNVDGSYLFRRFCCSKE 248
           R  K+R+S  D S + RRF CSKE
Sbjct: 80  RISKSRRSRNDESIIMRRFVCSKE 103


>ref|NP_566278.1| protein FAR1-related sequence 7 [Arabidopsis thaliana]
           gi|75186401|sp|Q9M8J3.1|FRS7_ARATH RecName: Full=Protein
           FAR1-RELATED SEQUENCE 7
           gi|6862929|gb|AAF30318.1|AC018907_18 unknown protein
           [Arabidopsis thaliana]
           gi|13430716|gb|AAK25980.1|AF360270_1 unknown protein
           [Arabidopsis thaliana] gi|23297525|gb|AAN12887.1|
           unknown protein [Arabidopsis thaliana]
           gi|332640844|gb|AEE74365.1| protein FAR1-related
           sequence 7 [Arabidopsis thaliana]
          Length = 764

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/65 (47%), Positives = 41/65 (63%)
 Frame = +3

Query: 54  EASDKGEMSSSSKPYVGMEFDSLHQAFLFYNEYAAVIGFSVRKDKTRKSNVDGSYLFRRF 233
           E SD      +++PY G+EF+S ++A  FY  YA V+GF VR  +  +S VDGS   RRF
Sbjct: 177 EDSDGQTQPKATEPYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRF 236

Query: 234 CCSKE 248
            CSKE
Sbjct: 237 VCSKE 241



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/61 (45%), Positives = 37/61 (60%)
 Frame = +3

Query: 66  KGEMSSSSKPYVGMEFDSLHQAFLFYNEYAAVIGFSVRKDKTRKSNVDGSYLFRRFCCSK 245
           + E  S  +PYVG+EFD+  +A  +YN YA   GF VR  +  +S  DG+   RRF CSK
Sbjct: 19  ENEGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSK 78

Query: 246 E 248
           E
Sbjct: 79  E 79


>gb|ABF98568.1| transposon protein, putative, unclassified, expressed [Oryza sativa
           Japonica Group]
          Length = 760

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/55 (54%), Positives = 40/55 (72%)
 Frame = +3

Query: 84  SSKPYVGMEFDSLHQAFLFYNEYAAVIGFSVRKDKTRKSNVDGSYLFRRFCCSKE 248
           +S+P+VGMEF+S   A +FY  YA+ +GFSVR  K+R+S  D S + RRF CSKE
Sbjct: 24  NSEPFVGMEFESEEAAKVFYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKE 78


Top