BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00025390
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase ...   131   5e-29
gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase...   129   2e-28
gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mo...   126   2e-27
ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase ...   125   3e-27
ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase...   124   6e-27

>ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
           precursor, putative [Ricinus communis]
           gi|223536483|gb|EEF38130.1| Ribulose bisphosphate
           carboxylase/oxygenase activase 1, chloroplast precursor,
           putative [Ricinus communis]
          Length = 473

 Score =  131 bits (330), Expect = 5e-29
 Identities = 62/68 (91%), Positives = 66/68 (97%)
 Frame = -1

Query: 205 AYEMSDDQQDITRGKGMVDSLFQAPQDAGTHFAVMSSYEYISTGLRTYHLDNNMGGFYIA 26
           AY+MSDDQQDITRGKGMVDSLFQAPQDAGTH+AVMSSYEY+STGLR Y+LDNNM GFYIA
Sbjct: 74  AYDMSDDQQDITRGKGMVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYNLDNNMDGFYIA 133

Query: 25  PAFMDKLV 2
           PAFMDKLV
Sbjct: 134 PAFMDKLV 141


>gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase
           activase [Flaveria bidentis]
          Length = 438

 Score =  129 bits (325), Expect = 2e-28
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = -1

Query: 205 AYEMSDDQQDITRGKGMVDSLFQAPQDAGTHFAVMSSYEYISTGLRTYHLDNNMGGFYIA 26
           AY+MSDDQQDITRGKGMVDSLFQAPQD+GTHFAVMSSYEYISTGLRTY LDNNM GFYIA
Sbjct: 74  AYDMSDDQQDITRGKGMVDSLFQAPQDSGTHFAVMSSYEYISTGLRTY-LDNNMDGFYIA 132

Query: 25  PAFMDKLV 2
           PAFMDKLV
Sbjct: 133 PAFMDKLV 140


>gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
          Length = 439

 Score =  126 bits (316), Expect = 2e-27
 Identities = 59/68 (86%), Positives = 65/68 (95%)
 Frame = -1

Query: 205 AYEMSDDQQDITRGKGMVDSLFQAPQDAGTHFAVMSSYEYISTGLRTYHLDNNMGGFYIA 26
           AY++SDDQQDITRGKGMVDSLFQAP DAGTH+AV+SSYEYISTGLR Y+LDNN+ GFYIA
Sbjct: 77  AYDISDDQQDITRGKGMVDSLFQAPSDAGTHYAVLSSYEYISTGLREYNLDNNVDGFYIA 136

Query: 25  PAFMDKLV 2
           PAFMDKLV
Sbjct: 137 PAFMDKLV 144


>ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
           chloroplastic-like [Glycine max]
           gi|290766479|gb|ADD60242.1| alpha-form rubisco activase
           [Glycine max] gi|290766489|gb|ADD60247.1| alpha-form
           rubisco activase [Glycine max]
          Length = 478

 Score =  125 bits (315), Expect = 3e-27
 Identities = 57/68 (83%), Positives = 65/68 (95%)
 Frame = -1

Query: 205 AYEMSDDQQDITRGKGMVDSLFQAPQDAGTHFAVMSSYEYISTGLRTYHLDNNMGGFYIA 26
           AY++SDDQQDITRGKG+VDSLFQAPQD GTH+A+MSSYEY+STGL+ Y+LDNNM GFYIA
Sbjct: 79  AYDVSDDQQDITRGKGLVDSLFQAPQDTGTHYAIMSSYEYLSTGLKQYNLDNNMDGFYIA 138

Query: 25  PAFMDKLV 2
           PAFMDKLV
Sbjct: 139 PAFMDKLV 146


>ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
           chloroplastic isoform 2 [Vitis vinifera]
          Length = 440

 Score =  124 bits (312), Expect = 6e-27
 Identities = 58/68 (85%), Positives = 64/68 (94%)
 Frame = -1

Query: 205 AYEMSDDQQDITRGKGMVDSLFQAPQDAGTHFAVMSSYEYISTGLRTYHLDNNMGGFYIA 26
           AY++SDDQQDITRGKGMVDSLFQAP  +GTH+AVMSSYEY+STGLR Y+LDNNM GFYIA
Sbjct: 75  AYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGLRQYNLDNNMDGFYIA 134

Query: 25  PAFMDKLV 2
           PAFMDKLV
Sbjct: 135 PAFMDKLV 142